Locus 6381

Sequence ID 3L_DroMel_CAF1
Location 17,084,727 – 17,084,824
Length 97
Max. P 0.898245
window10221

overview

Window 1

Location 17,084,727 – 17,084,824
Length 97
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 75.85
Mean single sequence MFE -26.97
Consensus MFE -18.56
Energy contribution -18.17
Covariance contribution -0.39
Combinations/Pair 1.10
Mean z-score -1.50
Structure conservation index 0.69
SVM decision value 1.00
SVM RNA-class probability 0.898245
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17084727 97 + 23771897
-CAAGCGGUUGGCAGAGAUUAACUUUCGGGUCGCUCAAAGCGACCACAGCAAGUGCUUUACAUUUAAAACA--CGGCAAAUGGCCAA----------------AGUGCGACAG---AGA
-...(((.(((((((((....((((.(.((((((.....))))))...).)))).)))).(((((......--....))))))))))----------------..))).....---... ( -27.90)
>DroVir_CAF1 40342 86 + 1
GUCAGCGGUUGGCAGAGAUUAACUUUUGGGUCGCUCAAAGCGACCGCAGCAAGUGCUUUACAUUUAAAACA--CGGCGCCA----------------------------GCAG---AGG
.......((((((.............((((((((.....)))))).))((..(((.((((....)))).))--).))))))----------------------------))..---... ( -27.40)
>DroPse_CAF1 46853 114 + 1
-CAAGCGGUUGGCAGAGAUUAACUUUCGGGUCGCUCAAAGCGACCACAGCAAGUGCUUUACAUUUAAAACACACGGCAAUG-GGAAAAAGGCAAACACCCAACAAUGCCGCAG---AGA
-.(((((.(((.(.((((.....)))).((((((.....))))))...)))).)))))...............(((((.((-((.............))))....)))))...---... ( -30.82)
>DroGri_CAF1 43553 79 + 1
GUCAGCGGUUGGCAGAGAUUAACUUUUGGGUCGCUCAAAGCGACCACAGCAAGUGCUUUACAUUUAAAACA--CGGCAUCA--------------------------------------
(((....((((.(((((......)))))((((((.....)))))).))))..(((.((((....)))).))--))))....-------------------------------------- ( -22.70)
>DroMoj_CAF1 49555 89 + 1
UUCAGCGGUUGGCAGAGAUUAACUUUUGGGUCGUUCAAAGCGACCACAGCAAGUGCUUUACAUUUUAAACA--UGGCGUCA----------------------------GCAGCGGAGG
(((.((.((((((((((....(((((((((((((.....)))))).))).)))).)))).(((.......)--))..))))----------------------------)).)).))). ( -27.10)
>DroAna_CAF1 42903 96 + 1
GCAAGCGGUUGGCAGAGAUUAACUUUCGGGUCGCUCAAAGCGACCACAGCAAGUGCUUUACAUUUAAAACA--CGGCAAUG-GGCAA----------------U-GGCCAUAG---AGA
....((.((((...((((.....)))).((((((.....)))))).))))..(((.((((....)))).))--).))....-(((..----------------.-.)))....---... ( -25.90)
>consensus
GCAAGCGGUUGGCAGAGAUUAACUUUCGGGUCGCUCAAAGCGACCACAGCAAGUGCUUUACAUUUAAAACA__CGGCAACA____________________________GCAG___AGA
....((.((((...((((.....)))).((((((.....)))))).))))(((((.....)))))..........)).......................................... (-18.56 = -18.17 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:59 2006