Locus 638

Sequence ID 3L_DroMel_CAF1
Location 1,882,484 – 1,882,577
Length 93
Max. P 0.915126
window978

overview

Window 8

Location 1,882,484 – 1,882,577
Length 93
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 74.77
Mean single sequence MFE -22.18
Consensus MFE -16.60
Energy contribution -18.60
Covariance contribution 2.00
Combinations/Pair 1.05
Mean z-score -1.28
Structure conservation index 0.75
SVM decision value 1.10
SVM RNA-class probability 0.915126
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1882484 93 - 23771897
CG-GUGUUUUUGUUUUUUGUUUUUUUAA--AG-UUUGUGCGUGGUUUUUGGCUGGCUGUCGAGUUUAGAAGCUUGAAAAUAGGAGAAUCGCGUGCUC
..-.........................--..-...(..((((((((((..(((....(((((((....)))))))...)))))))))))))..).. ( -22.30)
>DroPse_CAF1 5123 78 - 1
CUGUUGUGAUUGUUGUUGGGGGCUUUAACUCGUUUUGUGCGUGGU-------------------CUAGAAGCUCGGAAAUAUGAAUAUCGCGUGCUA
..((((((((...((((..(((((((.((((((.....))).)))-------------------...)))))))...)))).....)))))).)).. ( -16.60)
>DroSec_CAF1 4903 88 - 1
CG-GUGAUUUU-----UUCUUUUCAAAA--CG-UUUGUGCGUGGUUUUUGGCUGGCUGUCGAGCUUAGAAGCUUGAAAAUAUGAGAAUCGCGUGCUC
..-((((((((-----(..(((((((.(--((-(....)))).((((((((((.(....).))).))))))))))))))...)))))))))...... ( -24.70)
>DroSim_CAF1 5037 88 - 1
CG-GUGAUUUU-----UUUUUUUCAAAA--CG-UUUGUGCGUGGUUUUUGGCUGGCUGUCGAGUUUAGAAGCUUGAAAAUAUGAGAAUCGCGUGCUC
..-((((((((-----(..(((((((.(--((-(....)))).((((((((((.(....).)).)))))))))))))))...)))))))))...... ( -22.90)
>DroEre_CAF1 4949 85 - 1
CG-CUGU--------UUUGGUUCUUAAG--CA-UUUGUGCGUGGUUUUUGGCUAGCUGUCGAGCUUAGAAGCUUGAAAAUAUGAGAAUCGCGUGCUC
.(-((..--------...........))--).-...(..(((((((((((........(((((((....))))))).....)))))))))))..).. ( -25.14)
>DroYak_CAF1 5104 92 - 1
CG-AUGUGCUUUUC-UUUUUUUUUUUAA--CA-UUUGUGCGUGGUUUUUGGCUAGCUGUCGAGUUUAGAAGCUUGAAAAUAUGAGAAUCGCGUGCUC
.(-((((.......-............)--))-)).(..(((((((((((........(((((((....))))))).....)))))))))))..).. ( -21.43)
>consensus
CG_GUGUUUUU____UUUGUUUUUUAAA__CG_UUUGUGCGUGGUUUUUGGCUGGCUGUCGAGUUUAGAAGCUUGAAAAUAUGAGAAUCGCGUGCUC
....................................(..(((((((((((........(((((((....))))))).....)))))))))))..).. (-16.60 = -18.60 +   2.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:21 2006