Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,882,484 – 1,882,577 |
Length | 93 |
Max. P | 0.915126 |
Location | 1,882,484 – 1,882,577 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 74.77 |
Mean single sequence MFE | -22.18 |
Consensus MFE | -16.60 |
Energy contribution | -18.60 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.05 |
Mean z-score | -1.28 |
Structure conservation index | 0.75 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.915126 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1882484 93 - 23771897 CG-GUGUUUUUGUUUUUUGUUUUUUUAA--AG-UUUGUGCGUGGUUUUUGGCUGGCUGUCGAGUUUAGAAGCUUGAAAAUAGGAGAAUCGCGUGCUC ..-.........................--..-...(..((((((((((..(((....(((((((....)))))))...)))))))))))))..).. ( -22.30) >DroPse_CAF1 5123 78 - 1 CUGUUGUGAUUGUUGUUGGGGGCUUUAACUCGUUUUGUGCGUGGU-------------------CUAGAAGCUCGGAAAUAUGAAUAUCGCGUGCUA ..((((((((...((((..(((((((.((((((.....))).)))-------------------...)))))))...)))).....)))))).)).. ( -16.60) >DroSec_CAF1 4903 88 - 1 CG-GUGAUUUU-----UUCUUUUCAAAA--CG-UUUGUGCGUGGUUUUUGGCUGGCUGUCGAGCUUAGAAGCUUGAAAAUAUGAGAAUCGCGUGCUC ..-((((((((-----(..(((((((.(--((-(....)))).((((((((((.(....).))).))))))))))))))...)))))))))...... ( -24.70) >DroSim_CAF1 5037 88 - 1 CG-GUGAUUUU-----UUUUUUUCAAAA--CG-UUUGUGCGUGGUUUUUGGCUGGCUGUCGAGUUUAGAAGCUUGAAAAUAUGAGAAUCGCGUGCUC ..-((((((((-----(..(((((((.(--((-(....)))).((((((((((.(....).)).)))))))))))))))...)))))))))...... ( -22.90) >DroEre_CAF1 4949 85 - 1 CG-CUGU--------UUUGGUUCUUAAG--CA-UUUGUGCGUGGUUUUUGGCUAGCUGUCGAGCUUAGAAGCUUGAAAAUAUGAGAAUCGCGUGCUC .(-((..--------...........))--).-...(..(((((((((((........(((((((....))))))).....)))))))))))..).. ( -25.14) >DroYak_CAF1 5104 92 - 1 CG-AUGUGCUUUUC-UUUUUUUUUUUAA--CA-UUUGUGCGUGGUUUUUGGCUAGCUGUCGAGUUUAGAAGCUUGAAAAUAUGAGAAUCGCGUGCUC .(-((((.......-............)--))-)).(..(((((((((((........(((((((....))))))).....)))))))))))..).. ( -21.43) >consensus CG_GUGUUUUU____UUUGUUUUUUAAA__CG_UUUGUGCGUGGUUUUUGGCUGGCUGUCGAGUUUAGAAGCUUGAAAAUAUGAGAAUCGCGUGCUC ....................................(..(((((((((((........(((((((....))))))).....)))))))))))..).. (-16.60 = -18.60 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:21 2006