Locus 6379

Sequence ID 3L_DroMel_CAF1
Location 17,073,144 – 17,073,248
Length 104
Max. P 0.926770
window10219

overview

Window 9

Location 17,073,144 – 17,073,248
Length 104
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 71.06
Mean single sequence MFE -19.42
Consensus MFE -7.20
Energy contribution -8.28
Covariance contribution 1.08
Combinations/Pair 1.24
Mean z-score -2.03
Structure conservation index 0.37
SVM decision value 1.18
SVM RNA-class probability 0.926770
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17073144 104 + 23771897
AAACCCAAUUUGAAAUGGCUUGUCAAGGUGAGAAAAAAAAAAGAGUGGCUUAAAAAACCA----------------UUUGGUUUUAUAUUAAUCAAAGCACUUGACAAGAAAUCCAUACA
..............(((((((((((((.(((.....((((..((((((.........)))----------------)))..)))).......))).....)))))))))....))))... ( -21.80)
>DroSec_CAF1 31285 88 + 1
AAACCCAAUUUGAAACGGCUUGUCAAGGUGAGCAAAAAUAAAAUG--------------------------------UUGGUUUUAUAUUAAUCAAAGAAUUUGACAAGCAAUCCGUGAA
.................((((((((((.(((...((.(((((((.--------------------------------...))))))).))..))).....)))))))))).......... ( -17.50)
>DroSim_CAF1 32167 88 + 1
AAACGCAAUUUGAAACGGCUUGUCAAGGUGAGCAAAAAUAAAAUG--------------------------------UUGGUUUUAUAUUAAUCAAAGCAUUUGACAAGCAAUCCGUGAA
.................((((((((((.(((...((.(((((((.--------------------------------...))))))).))..))).....)))))))))).......... ( -17.50)
>DroEre_CAF1 30954 117 + 1
AAACGCAAUUUGAAACGGCUGGUCAAGGUGAGCAACAAGA---UGUGGAUUAACAAACGAAAUGUUUUCAUAUUAUAUUGCUUUUAUUUUAAUCAAAGCAAUUGACAAUUAAGCCAUAAA
................((((.(((((............((---((((((..((((.......))))))))))))...(((((((.((....)).)))))))))))).....))))..... ( -22.70)
>DroYak_CAF1 33140 101 + 1
AAACCAAACUCAAAUCGACUUGUCAAGGUGCGCAAAAAGA---UGUGGAUUAAAAAAGAA----------------UUUGGUUUUAUAUUAGUCAAAGCAAUUGACAAUUAAACCAUAAA
((((((((.((.....((....))..(((.((((......---)))).)))......)).----------------)))))))).......(((((.....))))).............. ( -17.60)
>consensus
AAACCCAAUUUGAAACGGCUUGUCAAGGUGAGCAAAAAGAAA_UGUGG_UUAA_AAA__A_________________UUGGUUUUAUAUUAAUCAAAGCAAUUGACAAGCAAUCCAUAAA
.................(((((((((((....)............................................((((((.......))))))....)))))))))).......... ( -7.20 =  -8.28 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:57 2006