Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,069,547 – 17,069,643 |
Length | 96 |
Max. P | 0.786053 |
Location | 17,069,547 – 17,069,643 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 78.85 |
Mean single sequence MFE | -21.47 |
Consensus MFE | -14.53 |
Energy contribution | -14.53 |
Covariance contribution | 0.01 |
Combinations/Pair | 1.18 |
Mean z-score | -1.75 |
Structure conservation index | 0.68 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786053 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17069547 96 - 23771897 UUUGAAUACUUAUCGUUGUGGAUUUGAAACGAUAAGGUUUUUUGAAACGCCAUUAAUGGUGUUUAAAAAAUUUAUAAAUA--------AGCAAGUAGUCCUUUA ((((....(((((((((..........)))))))))((((((((((.(((((....))))))))))))))).........--------..)))).......... ( -21.90) >DroEre_CAF1 27388 104 - 1 CUGGAAUCCUUAUCGUUGUGGACUUAAAACGAUAAGGUUCUUUUGAACGCCAUUACUGGUGCCUAAAUAAUUAAUAAAAACAACAAGCUGUACGCAGUCCUUUA ..((((.((((((((((..........))))))))))))))((((..(((((....)))))..))))...................((((....))))...... ( -23.70) >DroYak_CAF1 29189 103 - 1 UUGGAAUACUUAUCGUUGUGGAUUUAAGAUGAUAAUGUU-UUUUGAACGCCAUUAAUGGCGCCUAAAUUAUUUAUAAAAACAACAAUCAGUACAUAGUCCUUUA ..(((.((((.((.(((((...(((((((((((...(((-(...))))((((....))))......))))))).)))).))))).)).)))).....))).... ( -18.80) >consensus UUGGAAUACUUAUCGUUGUGGAUUUAAAACGAUAAGGUU_UUUUGAACGCCAUUAAUGGUGCCUAAAUAAUUUAUAAAAACAACAA_CAGUACGUAGUCCUUUA ..(((...(((((((((..........)))))))))...........(((((....)))))....................................))).... (-14.53 = -14.53 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:55 2006