| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,066,903 – 17,066,999 |
| Length | 96 |
| Max. P | 0.690450 |
| Location | 17,066,903 – 17,066,999 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.65 |
| Mean single sequence MFE | -25.03 |
| Consensus MFE | -17.13 |
| Energy contribution | -16.63 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.690450 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17066903 96 - 23771897 ----UCUUGUUGUUGUUUGCACAAUUUGUUUACGCAACGCGUGACGCUUAAAUGCUAAAUAAUGCAAAUGUAAAUGCGCUGGCAUUGUUUGAGUUCGCAU------------------ ----....(((((.((..(((.....)))..)))))))(((.(((((......))((((((((((...(((....)))...)))))))))).))))))..------------------ ( -25.40) >DroVir_CAF1 20513 99 - 1 CCGGUUUUCUUGUUGUUUAUACAAUUUGUUUACGCAACGCGUGACGCUUAAAUGCUAAAUAAUGCAAAUGUAAAUGCGAC-GCGUUGUUUGCCUUUGU---------------AU--- ..(((...(..(((((....)))))..).....(((((((((..((((((..(((........)))....)))..)))))-)))))))..))).....---------------..--- ( -22.70) >DroGri_CAF1 24938 117 - 1 GGGGCUUUGUUGUUGUUUAUACAAUUUGUUUACGCAACGCGUGACGCUUAAAUGCUAAAUAAUGCAAAUGUAAAUGCGGC-GCAUUGUUUGUCCUUGUAUUUGCCCCUGUGUUGUGGC (((((......(((((.((.((.....)).)).)))))(((.(((((......)).(((((((((...(((....)))..-))))))))))))..)))....)))))........... ( -31.50) >DroYak_CAF1 26505 96 - 1 ----UCUUGUUGUUGUUUGCACAAUUUGUUUACGCAACGCGUGACGCUUAAAUGCUAAAUAAUGCAAAUGUAAAUGCGUUGGCAUUGUUUGAGUUCGCAU------------------ ----....(((((.((..(((.....)))..)))))))(((.(((((......))((((((((((.(((((....))))).)))))))))).))))))..------------------ ( -28.20) >DroMoj_CAF1 27487 114 - 1 AUCGCUUUGUUUUUGUUUAUACAAUUUGUUUACGCAACGCGUGACGCUUAAAUGCUAAAUAAUGCAAAUGUAAAUGCGGC-GCAUUGUUUGGCUUUGUUUUUGCCACAAUUUUAU--- ...((.((((..((((....)))).........)))).))(((..((..((((((((((((((((...(((....)))..-))))))))))))...))))..)))))........--- ( -25.10) >DroAna_CAF1 25337 94 - 1 ------UUGUUGUUGUUUGCACAAUUUGUUUACGCAACGCGUGACGCUUAAAUGCUAAAUAAUGCAAAUGUAAAUGCGCUGCCAUUGUUUGAGUUUGUAU------------------ ------..(((((.((..(((.....)))..)))))))(((...))).(((((..(((((((((((..(((....))).)).))))))))).)))))...------------------ ( -17.30) >consensus ____UUUUGUUGUUGUUUACACAAUUUGUUUACGCAACGCGUGACGCUUAAAUGCUAAAUAAUGCAAAUGUAAAUGCGCC_GCAUUGUUUGACUUUGUAU__________________ ...........(((((.((.((.....)).)).)))))(((....((......))((((((((((...(((....)))...))))))))))....))).................... (-17.13 = -16.63 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:52 2006