| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,066,091 – 17,066,186 |
| Length | 95 |
| Max. P | 0.899963 |
| Location | 17,066,091 – 17,066,186 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.27 |
| Mean single sequence MFE | -28.45 |
| Consensus MFE | -19.03 |
| Energy contribution | -20.40 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17066091 95 + 23771897 GAUUCCAC--G-UCGAGAGCCCGACGACAGUGGCAAGAACAAAGCAUUUAAGAAGUUAUUGUCAUAAAUGUUUGAGUUUGUUUGUUGUCGGCAGCGCC---------------- ........--.-......((((((((((((..(((((....(((((((((.((........)).)))))))))...)))))))))))))))..))...---------------- ( -27.10) >DroVir_CAF1 19646 90 + 1 GAUUCCUUUUG-CCG----------GCAAGCGGC---AACAACGCAUUUAAGAAGUUAUUGUCAUAAAUGUUUGAGUUUGUUUGUUGUUGUUGCCGCU----UCGCCA------ ...........-..(----------(((((((((---(((((((((..((((.((.((((......)))).))...))))..)).)))))))))))))----).))).------ ( -33.00) >DroSec_CAF1 24365 95 + 1 GAAUCCAC--G-UCGAGAGCCCGACGACAGCGGCAAGAACAAAGCAUUUAAGAAGUUAUUGUCAUAAAUGUUUGAGUUUGUUUGUUGUCGGCAACGCC---------------- ........--(-(((......))))((((((((((((....(((((((((.((........)).)))))))))...)))).))))))))(....)...---------------- ( -26.80) >DroSim_CAF1 25751 95 + 1 GAAUCCAC--G-UCGAGAGCCCGACGACAGCGGCAAGAACAAAGCAUUUAAGAAGUUAUUGUCAUAAAUGUUUGAGUUUGUUUGUUGUCGGCAGCGCC---------------- ........--.-......((((((((((((..(((((....(((((((((.((........)).)))))))))...)))))))))))))))..))...---------------- ( -27.10) >DroEre_CAF1 24094 95 + 1 GAAUCCAC--U-UCGAAAGCCCGGCGACAGCGGCAAGAACAAAGCAUUUAAGAAGUUAUUGUCAUAAAUGUUUGAGUUUGUUUGUUGUCGGCAGCACC---------------- ........--.-......((((((((((((..(((((....(((((((((.((........)).)))))))))...)))))))))))))))..))...---------------- ( -26.50) >DroAna_CAF1 24582 112 + 1 UUUUCCAC--UUUUGAGGGCUCGACGACAACGGCAAGAACAAAGCAUUUAAGAAGUUAUUGUCAUAAAUGUUUGAGUUUGUUUGUUGUUGGAAGCACCAAGGAUUCUCCAUCCU ........--......(((((...(((((((((((((....(((((((((.((........)).)))))))))...)))).)))))))))..))).)).(((((.....))))) ( -30.20) >consensus GAAUCCAC__G_UCGAGAGCCCGACGACAGCGGCAAGAACAAAGCAUUUAAGAAGUUAUUGUCAUAAAUGUUUGAGUUUGUUUGUUGUCGGCAGCGCC________________ ....................((((((((((..(((((....(((((((((.((........)).)))))))))...)))))))))))))))....................... (-19.03 = -20.40 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:51 2006