Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,045,724 – 17,045,817 |
Length | 93 |
Max. P | 0.775669 |
Location | 17,045,724 – 17,045,817 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 91.69 |
Mean single sequence MFE | -27.37 |
Consensus MFE | -24.49 |
Energy contribution | -24.77 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.05 |
Mean z-score | -1.43 |
Structure conservation index | 0.89 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775669 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17045724 93 + 23771897 GCUUGCCAAAUGAAAUUCAUAGCAUAGUUUCGGUCGCAGCUC-GGCUGCGCUGAACUCUCUAUUUGUACAGGCAAGAUUGCUUAAGGG-GAA---CUU .((((((..(((.....))).((((((.(((((.((((((..-.)))))))))))....)))..)))...))))))........(((.-...---))) ( -26.90) >DroSec_CAF1 13354 93 + 1 GCUUGCCAAAUGAAAUUCAUAGCAUAGUUUCGGUCGCAGCCC-GGCUGCGCUGAACUCUCUAUUUGUACAGGCAAGAUUGCUUAAGGG-GAA---CUU .((((((..(((.....))).((((((.(((((.((((((..-.)))))))))))....)))..)))...))))))........(((.-...---))) ( -26.90) >DroSim_CAF1 14813 93 + 1 GCUUGCCAAAUGAAAUUCAUAGCAUAGUUUCGGUCGCAGCUC-GGCUGCGCUGAACUCUCUAUUUGUACAGGCAAGAUUGCUUAAGGG-GAA---CUU .((((((..(((.....))).((((((.(((((.((((((..-.)))))))))))....)))..)))...))))))........(((.-...---))) ( -26.90) >DroEre_CAF1 13039 93 + 1 GCUUGCCAAAUGAAAUUCAUAGCAUACUUUCGGUCGCAGCUC-GGCUGCGCUGAACUCUAUAUUUAUACAGGCAAGAUUGCUUAAGGA-GAA---CUU .((((((..(((.....)))........(((((.((((((..-.)))))))))))...............))))))............-...---... ( -24.90) >DroYak_CAF1 14327 93 + 1 GCUUGCCAAAUGAAAUUCAUAGCAUAGUUUCGGUCGCAGCUC-GGCUGCGCUGAACUCUAUAUUUGUACAGGCGAGAUUGCUUAAGGA-GAC---CUU .((((((..(((.....)))...((((.(((((.((((((..-.)))))))))))..)))).........)))))).........(..-..)---... ( -28.10) >DroAna_CAF1 12152 98 + 1 GCUUGCCAAAUGAAAUUCAUAGCAUAGUUUCGGGCGCUGCCGGGGCUGCUCUAAACUCUAUAUUUGUGCAGGCGAGAUUGCCUAAACGGGAAUGGCUU ((((((((((((.......(((..((((..(((......)))..))))..))).......)))))).))))))(..(((.((.....)).)))..).. ( -30.54) >consensus GCUUGCCAAAUGAAAUUCAUAGCAUAGUUUCGGUCGCAGCUC_GGCUGCGCUGAACUCUAUAUUUGUACAGGCAAGAUUGCUUAAGGG_GAA___CUU .((((((..(((.....)))........(((((.((((((....)))))))))))...............))))))...................... (-24.49 = -24.77 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:45 2006