Locus 6369

Sequence ID 3L_DroMel_CAF1
Location 17,045,321 – 17,045,414
Length 93
Max. P 0.563619
window10205

overview

Window 5

Location 17,045,321 – 17,045,414
Length 93
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.25
Mean single sequence MFE -25.62
Consensus MFE -16.03
Energy contribution -17.03
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.63
SVM decision value 0.06
SVM RNA-class probability 0.563619
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17045321 93 - 23771897
CUUUUGCC--------CAGAG-CAUAUAUCUGUGUCCGCUUCUUGGCAAUAACAUGCAUGAGUGUGCAAUUUUUGCAGUUGCCAAGACCAUCGUCAGUUCCU
.....((.--------((((.-......)))).)).....((((((((((....((((.((((.....)))).))))))))))))))............... ( -22.80)
>DroGri_CAF1 13187 91 - 1
UG---GUA--------UAUGUAGCCAUAUCUGUGGCCAUUACUUGGCAAUAACAUGCAUGAGUGUGCAAUUUUUGCAGUUGGCAAAAGCAUCGUCAGGGUCU
..---...--------......(((((....))))).....((((((.......(((((....))))).(((((((.....)))))))....)))))).... ( -23.70)
>DroEre_CAF1 12682 93 - 1
CCUUUGCC--------UGGAG-CAUAUAUCUGUGUCCGCUUCUUGGCAAUAACAUGCAUGAGUGUGCAAUUUCUGCAGUUGCCAAGACCAUCGUCAGCUCCU
........--------.((((-(........((....)).((((((((((....((((.((((.....)))).)))))))))))))).........))))). ( -28.20)
>DroYak_CAF1 13956 93 - 1
CCUUCGCC--------UAGAG-CAUAUAUCUGUGUCCGCUUCUUGGCAAUAACAUGCAUGAGUGUGCAAUUUUUGCAGUUGCCAAGACCAUCGUCAGCUCCU
........--------..(((-(........((....)).((((((((((....((((.((((.....)))).)))))))))))))).........)))).. ( -24.70)
>DroMoj_CAF1 13871 93 - 1
UGUGUGCA--------UAUAU-GGCAUAUCUGUGGCCGUUACUUGGCAAUAACAUGCAUGAGUGUGCAAUUUGUGCAGUUGGCAAAGGCAUCGUCAGGCACU
...((((.--------....(-(((((..((.((((((.....))))..((((.((((..(((.....)))..)))))))).)).))..)).)))).)))). ( -28.10)
>DroAna_CAF1 11819 101 - 1
CUACUGCCGUCGAAAAAAAAA-CAUAUAUCUGUGUCCGCUUCUUGGCAAUAACAUGCAUGAGUGUGCAAUUUUUGCAGUUGCCAAGACCAUCGUCAGCUCCU
.....((.(.(((.......(-((((....))))).....((((((((((....((((.((((.....)))).))))))))))))))...))).).)).... ( -26.20)
>consensus
CCUUUGCC________UAGAG_CAUAUAUCUGUGUCCGCUUCUUGGCAAUAACAUGCAUGAGUGUGCAAUUUUUGCAGUUGCCAAGACCAUCGUCAGCUCCU
.............................(((........((((((((((....((((..(((.....)))..)))))))))))))).......)))..... (-16.03 = -17.03 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:44 2006