Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 17,042,106 – 17,042,217 |
Length | 111 |
Max. P | 0.899363 |
Location | 17,042,106 – 17,042,217 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 74.10 |
Mean single sequence MFE | -56.03 |
Consensus MFE | -26.46 |
Energy contribution | -26.55 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.52 |
Mean z-score | -2.08 |
Structure conservation index | 0.47 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17042106 111 + 23771897 GCAUGGCCAGCAGUUCGCUGAGCGGAUAGUGGGCGGCGGCCAGAGCGGCAUUCUGACGCAAUUGGGCCUGUUGCAGCUG---CGCGGCG---GCGGCAGCAGCGGGCACAUUGGCAG ((.(((((.((.((((((((......)))))))).)))))))..))...........((...((.(((((((((.((((---(......---))))).))))))))).))...)).. ( -53.30) >DroVir_CAF1 4516 114 + 1 GCAUCGCCAGCAGCUCGCUGAGCGGAUAAUGGGCGGCGGCAAGCGCGGCGUUUUGACGCAGCUGCGCCUGCUGGGCAGC---CGCAGCAGCAGCUGCUGCUGCUGGCGCUGACGCAG .((.(((((((((((((((.(........).)))))(((((.(((((((((......)).))))))).)))))((((((---.((....)).)))))))))))))))).))...... ( -62.10) >DroGri_CAF1 10364 111 + 1 GCAUGCCCAGAAGCUCACUGAGCGGAUAAUGUGCAGCAGCAAGUGCUGCAUUCUGACGCAAUUGCGCCUGCUGGGCAGC---AGCGGCU---GCAGCUGCUGCGGGCGCUGUGGCCG ((.(((((((..((((...))))((.....((((((((.....)))))))).....(((....)))))..)))))))))---..((((.---.((((.((.....))))))..)))) ( -55.40) >DroWil_CAF1 13984 111 + 1 GCAUGGCCAACAGCUCGCUAAGAGGAUAAUGAGCGGCUGCCAGUGCAGCAUUCUGACGCAAUUGCGCCUGCUGUUGGAC---GACAGCA---GCGGCUGCUGCCGGCGCCGUUGCUG (((((((....(((.((((............))))))))))).)))...........(((((.(((((.(((((((...---..)))))---))(((....)))))))).))))).. ( -50.00) >DroMoj_CAF1 10705 105 + 1 GCAUCGCCAGCAGUUCGCUGAGCGGAUAGUGGGCAGCGGCGAGGGCUGCAUUUUGGCGCAGCUGCGCCUGCUGGGCGGC---UGCUGCG---GCCGCCGCUGCCGGCGCUG------ ((.((((((((.....)))).))))...((.(((((((((...(((((((.......((((((((.((....)))))))---)))))))---)))))))))))).))))..------ ( -66.21) >DroAna_CAF1 8952 114 + 1 GCAUGGCCAGGAGUUCGCUUAGCGGAUAAUGGGCUGCUGCAAGGGCCGCAUUUUGUCGCAACUGAGCUUGCUGUGCCACCGCUGCAGCU---GCCGCGGCGGCCGGGGCAUUGGCAG ((...(((..(((((((.((.((((..((((((((........)))).))))...)))))).))))))).(((.(((.((((.((....---)).)))).)))))))))....)).. ( -49.20) >consensus GCAUGGCCAGCAGCUCGCUGAGCGGAUAAUGGGCGGCGGCAAGGGCGGCAUUCUGACGCAACUGCGCCUGCUGGGCAGC___CGCAGCA___GCCGCUGCUGCCGGCGCUGUGGCAG .(((..((..(((....)))...))...)))((((((((((......((........))......((.(((((...........)))))...))))))))))))............. (-26.46 = -26.55 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:41 2006