| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,038,078 – 17,038,180 |
| Length | 102 |
| Max. P | 0.988677 |
| Location | 17,038,078 – 17,038,180 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 73.15 |
| Mean single sequence MFE | -50.32 |
| Consensus MFE | -21.81 |
| Energy contribution | -21.53 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.43 |
| SVM decision value | 2.13 |
| SVM RNA-class probability | 0.988677 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17038078 102 + 23771897 CGCCACCGGAGGGGGCGACACCUGUCGCCGCAACACCAGAGGCGGCGCCAGCGGUCGCACCUCUGCUGCGGCCCGGGGUAGCGCUACA---AGCGGUACCAUAAC .(((.(.(.((((((((((..(((.((((((..(....)..)))))).)))..))))).))))).).).)))....((((.(((....---.))).))))..... ( -54.30) >DroVir_CAF1 123 87 + 1 C---AGCGGCUGCAGCAGCC---------GCACCACCGCCAGCGGGGCCAGU---GGCAGCUCUGCUGCGGCCCGCAUUCGUGCUACA---UGUGGUACCAUAAC .---.(((((((((((((..---------((.((((.(((.....)))..))---))..)).))))))))).))))....((((((..---..))))))...... ( -42.10) >DroGri_CAF1 5664 99 + 1 CAGCCGCUGCAGCAGCAGCAC---CAGCAACACCACCACCAGCGGGGCCGGU---GGCGGCUCUGCUGCGGCCGGCAUUCGUGCUACACGUUGUGGUACCAUAAC ..(((((((((((((.(((..---..((..((((.((.((...))))..)))---))).)))))))))))).))))....(((((((.....)))))))...... ( -47.50) >DroSec_CAF1 5685 102 + 1 CGCCACCGGAGGGGGCGACACCUGUCGCCGCAACACCAGAGGCGGCGCCAGCGGGGGCACCUCUGCUGCGGCCCGGGGUAGCGCUACA---AGCGGUACCAUAAC .....((((....((((((....))))))((..((.((((((..((.((....)).)).)))))).))..))))))((((.(((....---.))).))))..... ( -51.40) >DroSim_CAF1 6715 102 + 1 CGCCACCGGAGGGGGCGACACCUGUCGCCGCAACACCAGAGGCGGCGCCAGCGGGGGCACCUCUGCUGCGGCCCGGGGUAGCGCUACA---AGCGGUACCAUAAC .....((((....((((((....))))))((..((.((((((..((.((....)).)).)))))).))..))))))((((.(((....---.))).))))..... ( -51.40) >DroMoj_CAF1 6006 96 + 1 CGGCAGCGGCAGCGGCAGCCG---CUGCUGCACCGCCGCCAGCGGUGCAAUU---GGCGGCUCUGCUGCGGCCCGGAUUCGUGCUACA---UGUGGUACCAUAAC (((..((.(((((((.(((((---((..((((((((.....))))))))...---)))))))))))))).))))).....((((((..---..))))))...... ( -55.20) >consensus CGCCACCGGAGGCGGCAACAC___UCGCCGCAACACCACAAGCGGCGCCAGC___GGCACCUCUGCUGCGGCCCGGAGUAGCGCUACA___AGCGGUACCAUAAC .....((((..(.(((((......))))).)....((...(((((.(((......)))....)))))..)).)))).....(((........))).......... (-21.81 = -21.53 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:34 2006