Locus 6362

Sequence ID 3L_DroMel_CAF1
Location 17,032,573 – 17,032,675
Length 102
Max. P 0.833179
window10191

overview

Window 1

Location 17,032,573 – 17,032,675
Length 102
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 76.46
Mean single sequence MFE -34.70
Consensus MFE -23.27
Energy contribution -24.10
Covariance contribution 0.83
Combinations/Pair 1.09
Mean z-score -1.44
Structure conservation index 0.67
SVM decision value 0.72
SVM RNA-class probability 0.833179
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17032573 102 + 23771897
UGCGGCGAUGCCGACGGCCCAUAGCUGUGGGCAGCGGCAGCAGCCGCCUGAUAGUUGUUCAUCACUGCAAUAAGAGG--GCACAGAAGGGACAUUCG-UUAGAUA
.(((((..(((((...((((((....))))))..)))))...)))))(((((...(((((.((..(((.........--)))..))..)))))...)-))))... ( -41.80)
>DroGri_CAF1 179 86 + 1
UGCGGCGAGGCCGACGGACCGUAGCUGUGAGCGGCUGCAGCAGCCGCCUGAUAGUUGUUCAUCACUGCAAGGAAAAG--ACAUUGA----GC-------------
(((((.((((((...)).)).(((((((.((((((((...)))))).)).)))))))....)).)))))........--.......----..------------- ( -29.10)
>DroSec_CAF1 260 95 + 1
UGCGGCGAUGCCGACGGUCCAUAGCUGUGGGCAGCCGCAGCAGCCGCCUGAUAGUUGUUCAUCACUGCAAUAAGA---------GAAAGGACAUUCA-UUAGAUA
((((((..((((.(((((.....))))).))))))))))((....))(((((...(((((.((.((......)).---------))..)))))...)-))))... ( -32.70)
>DroEre_CAF1 179 97 + 1
UGCGGCGAUGCCGACGGUCCAUAGCUGUGGGCGGCCGCAGCAGCCGCCUGAUAGUUGUUCAUCACUGCAAUAG----AGGCAC-AAAAGGUCGGGCG-UUAAA--
((((((..((((.(((((.....))))).)))))))))).....((((((((..((((.(.((.........)----).).))-))...))))))))-.....-- ( -39.80)
>DroYak_CAF1 254 103 + 1
UGCGGCGAUGCCGACGGUCCAUAGCUGUGGGCAGCCGCAGCAGCCGCCUGAUAGUUGUUCAUCACUGCAACGGGAAGGAUUAA-AAAAGGACAUUCG-UCAAAUU
...(((...)))((((((((...(((((((....))))))).....(((....(((((........)))))....))).....-....))))...))-))..... ( -35.30)
>DroMoj_CAF1 179 99 + 1
UGAGGCGAGGCCGACGGACCAAAGCUGUGGGCGGCAGCAGCAGCCGCCUGAUAGUUGUUCAUCACUGCAAGCAAAGG--AGAGCGA----GAAUUCGAUGAGAUU
...(((...)))..((((....(((((((((((((.......))))))).))))))((((.((.((........)))--)))))..----...))))........ ( -29.50)
>consensus
UGCGGCGAUGCCGACGGUCCAUAGCUGUGGGCAGCCGCAGCAGCCGCCUGAUAGUUGUUCAUCACUGCAAUAAGA_G__ACAC_GAAAGGACAUUCG_UUAGAU_
((((((...(((.(((((.....))))).))).))))))((((.....((((........))))))))..................................... (-23.27 = -24.10 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:30 2006