Locus 6359

Sequence ID 3L_DroMel_CAF1
Location 17,012,747 – 17,012,867
Length 120
Max. P 0.900078
window10187

overview

Window 7

Location 17,012,747 – 17,012,867
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 91.27
Mean single sequence MFE -41.95
Consensus MFE -35.56
Energy contribution -35.20
Covariance contribution -0.36
Combinations/Pair 1.18
Mean z-score -2.21
Structure conservation index 0.85
SVM decision value 1.01
SVM RNA-class probability 0.900078
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17012747 120 + 23771897
CACCUGCCUGAAGGAGAUCCUCAAGGAGCUGGACGACCAGCUGACCGAACAGGAGCUGGACAUUAUGAUCGAGGAGAUCGAUUCCGAUGGCUCCGGUACAGUGGAUUUCGAUGGUGAGUG
(((..(((.....(((((((.(..((((((((....))))))..))(.((.(((((....((((..((((((.....))))))..))))))))).)).).).)))))))...)))..))) ( -43.60)
>DroVir_CAF1 1991 120 + 1
CACCUGUCUGAAGGAGAUCCUCAAGGAGCUCGACGAUCAGCUGACCGAACAGGAAUUGGACAUCAUGAUCGAGGAAAUCGAUAGCGAUGGCUCCGGUACAGUUGAUUUCGAUGGUGAGUA
((((.(((.....(((.(((....))).)))((.(((((((((.((.....)).((((((((((...(((((.....)))))...))))..)))))).)))))))))))))))))).... ( -41.80)
>DroPse_CAF1 7633 120 + 1
CACCUGCCUGAAGGAGAUCCUGAAGGAGCUCGACGAUCAGCUGACCGAUCAGGAACUCAACAUGAUGAUUGAGGAGAUCGAUAGUGAUGGUUCCGGUACAGUGGAUUUCGACGGUGAGUC
((((..(((..(((....)))..))).(.((((.((((.(((((((.....(((((.((.(((....(((((.....))))).))).)))))))))).)))).))))))))))))).... ( -40.30)
>DroGri_CAF1 693 119 + 1
CACCUGCUUGAAGGAGAUCCUGAAGGAGCUCGACGAUCAGCUGACCGAACAGGAAUUGGACAUUAUGAUCGAGGAAAUCGAUAGUGAUGGUUCCGGUACAGUUGAUUUCGAUGGUGAGU-
((((.((((..(((....)))....))))((((.(((((((((.((.....)).((((((((((((.(((((.....))))).))))))..)))))).))))))))))))).))))...- ( -44.00)
>DroMoj_CAF1 747 119 + 1
CACCUGCCUGAAGGAGAUCCUCAAGGAGCUCGACGAUCAACUGACCGAACAGGAAUUGGACAUUAUGAUCGAGGAAAUCGAUAGCGAUGGUUCCGGUACAGUUGAUUUCGAUGGUGAGU-
((((..(((..(((....)))..)))...((((.(((((((((.((.....)).((((((((((...(((((.....)))))...))))..)))))).))))))))))))).))))...- ( -41.70)
>DroPer_CAF1 7288 120 + 1
CACCUGCCUGAAGGAGAUCCUGAAGGAGCUCGACGAUCAGCUGACCGAUCAGGAACUCAACAUGAUGAUUGAGGAGAUCGAUAGUGAUGGUUCCGGUACAGUGGAUUUCGACGGUGAGUC
((((..(((..(((....)))..))).(.((((.((((.(((((((.....(((((.((.(((....(((((.....))))).))).)))))))))).)))).))))))))))))).... ( -40.30)
>consensus
CACCUGCCUGAAGGAGAUCCUCAAGGAGCUCGACGAUCAGCUGACCGAACAGGAACUGGACAUUAUGAUCGAGGAAAUCGAUAGCGAUGGUUCCGGUACAGUGGAUUUCGAUGGUGAGU_
((((..(((..(((....)))..)))...((((.((((.(((((((.....(((((....((((...(((((.....)))))...)))))))))))).)))).)))))))).)))).... (-35.56 = -35.20 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:27 2006