Locus 6358

Sequence ID 3L_DroMel_CAF1
Location 17,010,832 – 17,010,946
Length 114
Max. P 0.989500
window10186

overview

Window 6

Location 17,010,832 – 17,010,946
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 87.99
Mean single sequence MFE -42.36
Consensus MFE -33.60
Energy contribution -34.72
Covariance contribution 1.12
Combinations/Pair 1.12
Mean z-score -2.65
Structure conservation index 0.79
SVM decision value 2.17
SVM RNA-class probability 0.989500
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17010832 114 + 23771897
ACCAAUUCAUGGAUGUGGGCAGAACAUUCCUCACUGCCGCUGCCCACGUUUCGCUCUCCGGCGACAAACGGAAUGGGGGGCAUUGCUCCAGUGCCAGUGGGGAUUUCUCCAUCU
.(((.(((...(((((((((((..((........))...)))))))))))(((((....))))).....))).)))..(((((((...))))))).((((((....)))))).. ( -44.60)
>DroSec_CAF1 2439 114 + 1
ACCAAUUCAUGAAUGUGGGCAGAACAUUCCUCACUGUCGCUGCCCACGUUCCGCCCUCCAGCGACAAACGGAAUGGGGGGCAUUGCUCCAGAGCCAGUGGGGAUUUCUCCAUCU
..........((((((((((((.(((........)))..)))))))))))).((((((((.((.....))...))))))))...(((....)))..((((((....)))))).. ( -47.30)
>DroSim_CAF1 2439 114 + 1
ACCAAUUCAUGAAUGUGGGCAGAACAUUCCUCACUGUCGCUGCCCACGUUCAGCCCUCCGUCGACAAACGGAAUGGGGGGCAUUGCUCCAGUGCCAGUGGGGAUUUCUCCAUCU
.........(((((((((((((.(((........)))..))))))))))))).((((((((......)))))..))).(((((((...))))))).((((((....)))))).. ( -49.50)
>DroEre_CAF1 3065 106 + 1
ACCAAUUCAUGAAUGAGGGCAGAACAUUCCUUACCGUCGCAGCCCACGUUCCGCUCUCCGGCGACAAACUGGAUGG--GGCAUUGCUCCA------GUGGGGAUUUCUCCAUCU
..............((.((.((((...(((((((.(..(((((((.(((((((((....)))).......))))))--)))..)))..).------))))))).)))))).)). ( -32.41)
>DroYak_CAF1 2739 106 + 1
AGCAAUUUGUGAAUGAGGGCAGAACAUUCCUUGCUGUCGCUGCCCACGUUCAGCUCUCCUACGACAAACUGGAUGG--GGCAUUGCUCCA------GUGGGGAUUUCUCCAUCU
..............((.((.((((...((((..(((..(((((((.(((((((.((......))....))))))))--))))..))..))------)..)))).)))))).)). ( -38.00)
>consensus
ACCAAUUCAUGAAUGUGGGCAGAACAUUCCUCACUGUCGCUGCCCACGUUCCGCUCUCCGGCGACAAACGGAAUGGGGGGCAUUGCUCCAG_GCCAGUGGGGAUUUCUCCAUCU
..((((....((((((((((((..((........))...)))))))))))).((((((((.............))))))))))))...........((((((....)))))).. (-33.60 = -34.72 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:25 2006