Locus 6357

Sequence ID 3L_DroMel_CAF1
Location 17,009,955 – 17,010,045
Length 90
Max. P 0.537384
window10185

overview

Window 5

Location 17,009,955 – 17,010,045
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 80.81
Mean single sequence MFE -26.15
Consensus MFE -12.53
Energy contribution -12.95
Covariance contribution 0.42
Combinations/Pair 1.36
Mean z-score -2.37
Structure conservation index 0.48
SVM decision value 0.01
SVM RNA-class probability 0.537384
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17009955 90 - 23771897
CGAAAAUGGCAAUCAUACGCUGUCUCCAUCGAGGCCAACGCUUCGUGUCCAGCGUAUUGCCAUUGAUUACUUUGGUUGGUCUCAUUGCCA
......(((((((.((((((((....((.((((((....))))))))..)))))))).(((((..(.....)..).))))...))))))) ( -29.90)
>DroPse_CAF1 1641 90 - 1
CCAAAAUAGCCAUUAUACGCUGUCUGCAUCGUGGUCAGCGUUUCGUGUCGAGCAUGCUGCCGCUGAUUACUCUGGUAAGUAAAAAAUCAA
........((((......((.....))...(((((((((((..((((.....))))..).))))))))))..)))).............. ( -23.90)
>DroSim_CAF1 1599 90 - 1
CGAAAAUGGCAAUCAUACGCUGUCUCCAUCGAGGCCAACACUUUGUGUCCAGCGUAUUGCCAUUGAUUACUUUGGUUGGUCCCAUUGUCA
....(((((((...((((((((((((....)))))..((((...))))..))))))))))))))....((..(((......)))..)).. ( -25.80)
>DroEre_CAF1 1882 90 - 1
CGAAAAUAGCAAUCAUACGUUGUCUUCAUCGAGGCCAACACUUUGUGUCCAGUAUAUUGCCACUGAUAACUUUGGUUGGUCUCAUUGAUA
.(((.(((((........))))).)))...(((((((((......((((.(((........)))))))......)))))))))....... ( -24.90)
>DroYak_CAF1 1606 90 - 1
CGAAAAUGGCAAUCAUACGUUGUCUUCAUCGAGGCCAACACUUUGUGUCCAGUAUAUUGCCACUGAUUACUUUGGUUGGUCUCAUUGCCA
......(((((((.....(.((....)).)(((((((((.(...(((..((((........))))..)))...))))))))))))))))) ( -28.50)
>DroPer_CAF1 1641 90 - 1
CCAAAAUAGCCAUUAUACGCUGUCUGCAUCGUGGUCAGCGUUUCGUGUCGAGCAUGCUGCCGCUGAUUACUCUGGUAAGUAAAAAAUCAA
........((((......((.....))...(((((((((((..((((.....))))..).))))))))))..)))).............. ( -23.90)
>consensus
CGAAAAUAGCAAUCAUACGCUGUCUCCAUCGAGGCCAACACUUCGUGUCCAGCAUAUUGCCACUGAUUACUUUGGUUGGUCUCAUUGCCA
.....(((((........))))).......(((((((((.(...(((..((((........))))..)))...))))))))))....... (-12.53 = -12.95 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:24 2006