| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 17,009,320 – 17,009,437 |
| Length | 117 |
| Max. P | 0.532837 |
| Location | 17,009,320 – 17,009,437 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 78.37 |
| Mean single sequence MFE | -33.53 |
| Consensus MFE | -22.48 |
| Energy contribution | -22.12 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532837 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 17009320 117 - 23771897 --GAAAUACACAGAAUAGUACUUACUGUAAGGUAAAGGGCUUGCUGAAAAGCACAAAGGAGAAGGCUAUAGUCACAGCCUUGCGGGCGGUGGUCACUGUGGCAGCUAUGGGGGCACCAC --......(((((...(.((((..(((((((((........((((....))))..........(((....)))...)))))))))..)))).)..))))).......(((.....))). ( -33.20) >DroVir_CAF1 1450 112 - 1 ACCGAA---GCAU-CU---ACUUACUGCACGGUGAAGGGUUUGCUGAAGAGCAGGAACGAGAAGGCUAUGGUCACAGCCUUGCGCGCGGUGGUCACUGUUGCGGCUAAGGGAGCGCCGC ..((..---((.(-((---.(((((((((((((((.(..((((((....))))))..)(.(((((((........)))))).).).......)))))).))))).)))))))))..)). ( -36.50) >DroEre_CAF1 1234 113 - 1 --CAAUUUUACAG-AU---ACUAACUGUAAGGUAAAGGGCUUGCUGAAAAGCACAAAUGAAAAGGCUAUGGUCACAGCUUUGCGUGCGGUGGUUACUGUGGCAGCUAUGGGAGCACCAC --..(((((((((-..---.....)))))))))...(((((((((....)))...........((((...(((((((..(..(.....)..)...)))))))))))....)))).)).. ( -33.30) >DroWil_CAF1 572 114 - 1 --AAAACUUAGAAAAA---ACUUACUGUAAUGUAAAAGGUUUGCUGAACAGCACAAAUGAAAAGGCUAUAGUCACUGCCUUCCGUGCUGUGGUCACUGUGGCGGCUAUAGGAGCUCCAC --.....((((...((---((((((......)))...))))).))))(((((((....((..((((..........)))))).))))))).......((((.((((.....)))))))) ( -27.70) >DroYak_CAF1 964 113 - 1 --GAAUUUUACAA-AU---ACUAACUGCAAGGUAAAGGGCUUGCUGAAGAGCACAAAGGAAAAGGCUAUGGUCACAGCCUUGCGGGCGGUGGUCACUGUGGCAGCUAUAGGAGCACCAC --...........-..---.....(((((((((.....((((......))))...........(((....)))...)))))))))..((((.((.((((((...)))))))).)))).. ( -35.90) >DroAna_CAF1 969 104 - 1 ------------GUAU---ACAUACUGGAUUGUAAAGGGUUUGCUAAAGAGCACAAAUGAAAAGGCUAUGGUUACAGCCUUACGUGCGGUUGUGACCGUGGCGGCUAUUGGAGCUCCAC ------------...(---(((........))))...((...(((....(((.....(....).(((((((((((((((........))))))))))))))).))).....))).)).. ( -34.60) >consensus __CAAAUUUACAG_AU___ACUUACUGUAAGGUAAAGGGCUUGCUGAAGAGCACAAAUGAAAAGGCUAUGGUCACAGCCUUGCGUGCGGUGGUCACUGUGGCAGCUAUGGGAGCACCAC ....................................(((((((((....)))............((((((((.((.(((........))).)).))))))))........)))).)).. (-22.48 = -22.12 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:23 2006