Locus 6355

Sequence ID 3L_DroMel_CAF1
Location 17,007,458 – 17,007,566
Length 108
Max. P 0.880647
window10183

overview

Window 3

Location 17,007,458 – 17,007,566
Length 108
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 77.11
Mean single sequence MFE -23.95
Consensus MFE -14.38
Energy contribution -14.30
Covariance contribution -0.08
Combinations/Pair 1.47
Mean z-score -1.86
Structure conservation index 0.60
SVM decision value 0.91
SVM RNA-class probability 0.880647
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 17007458 108 + 23771897
UAUCGCCUCGAAUUCCGGCCCAUUUCUGGCCACAAACUCCGCCAGUUUGUCGAUAAUAUUUCGUAAACUGGCAUCUGCAAAUA----GAAAGCAAAUGGUUUUUGCAAAAAA
....((..........((((.......)))).........(((((((((.(((.......))))))))))))....)).....----....(((((.....)))))...... ( -29.80)
>DroPse_CAF1 15829 102 + 1
GAUUGCUUCGAACUCGGGCCCAUUGCGCGCUACGAACUCGGCCAGUUUAUCUAUUAUAUUGCGUAAAUUGGCAUCUGAAA-------GAAGGCAAU---UUUGUAUAUAAAA
(((((((((((..((((((.(.....).))).)))..)))((((((((((.((......)).))))))))))........-------..)))))))---)............ ( -25.50)
>DroSim_CAF1 14330 108 + 1
UAUUGCCUCGAAUUCCGGACCAUUUCUGGCCACAAACUCCGCCAGUUUGUCGAUAAUAUUCCGUAAACUAGCAUCUGCAAAUG----AAAAGCAAAUGGUUUUUGCAAAAAA
..((((..........((.(((....))))).........((.((((((..((......))..)))))).))....))))...----....(((((.....)))))...... ( -21.60)
>DroEre_CAF1 18251 108 + 1
AAUGGCCUCGAAUUCCGGCCCAUUUCUGGCCACAAACUCCGCCAGUUUGUCGAUAAUAUUUCGUAAACUAGCAUCUGUAAAAA----GAAAGAAAACGGUUUUUGCAAAAAA
..(((((..((((........))))..)))))((((..((((.((((((.(((.......))))))))).)).(((......)----))........))..))))....... ( -24.90)
>DroWil_CAF1 15610 109 + 1
AAUUGCUUCAAAUUCGGGUCCAUUUCGUGCCACAAAUUCCGCUAGUUUAUCUAUUAUAUUGCGUAAACUGGCAUCUGCAAAAGCAAAAAAAAAAAAUAGUAUAU---AAAAA
..((((((........((..(.....)..)).........((((((((((.((......)).))))))))))........))))))..................---..... ( -20.40)
>DroAna_CAF1 13706 92 + 1
AAUGGCUUCGAAUUCUGGUCCAUUUCUGGCCACAAACUCGGCCAGUUUGUCAAUAAUAUUGCGUAAACUGGCAUCUGCAA--------------------UUUUGCAUAAAA
..(((((..((((........))))..)))))........((((((((((((((...)))).))))))))))...((((.--------------------...))))..... ( -21.50)
>consensus
AAUUGCCUCGAAUUCCGGCCCAUUUCUGGCCACAAACUCCGCCAGUUUGUCGAUAAUAUUGCGUAAACUGGCAUCUGCAAA______GAAAGCAAAUGGUUUUUGCAAAAAA
....((..........((((.......)))).........(((((((((..((......))..)))))))))....)).................................. (-14.38 = -14.30 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:22 2006