| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,999,178 – 16,999,278 |
| Length | 100 |
| Max. P | 0.517186 |
| Location | 16,999,178 – 16,999,278 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 80.57 |
| Mean single sequence MFE | -36.05 |
| Consensus MFE | -24.03 |
| Energy contribution | -25.78 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517186 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16999178 100 + 23771897 CGUAUCCUUCGGAAUGUGCAUUCUCGCGCUCGUCGAUCCGAUCGGCAACG---------CAUAACGGUAACGGGCACGUUCUG-GGAACACCGACUUGGGUUCGGAAUGU-- ....(((.(((((((((((......(((...((((((...))))))..))---------)....((....)).))))))))))-)((((.((.....)))))))))....-- ( -35.30) >DroSec_CAF1 9078 102 + 1 CGUAUCCUUCGGAAUGUGCAUUCUCGCGCUCGUCGAUCCGACCGGCAACG---------CAUAACGGUAACGGGCACGUUCUG-GGAACCCCGACUUGGGUUCGGAAUGUGU ....(((.(((((((((((......(((((.((((...)))).)))...)---------)....((....)).))))))))))-)((((((......)))))))))...... ( -37.70) >DroSim_CAF1 6082 102 + 1 CGUAUCCUUCGGAAUGUGCAUUCUCGCGCUCGUCGAUCCGACCGGCAGCG---------CAUAACGGUAACGGGCACGUUCUG-GGAACCCCGACUUGGGUUCGGAAUGUGU ....(((.(((((((((((......(((((.((((.......))))))))---------)....((....)).))))))))))-)((((((......)))))))))...... ( -43.40) >DroEre_CAF1 9985 102 + 1 CGUAUCCUUCGGAAUGUGCAUUCCCGCGCUCGUCGCUCCGAUCGGCCACA---------AAUAACGGUAUCGGGCACGUUCUG-GGAACCCCGACUUGGGUUCGGAAUGUGU ....(((.(((((((((((......(((.....))).(((((..(((...---------......))))))))))))))))))-)((((((......)))))))))...... ( -38.70) >DroYak_CAF1 6383 102 + 1 CGUAUCCUUCGGAAUGUGCAUUCUCGCGCUCGUCGAUCCGAUCGGCCGCA---------AAUAACGGUAACGGGCACGUUCUG-GGAACCCCGACUUGGGUUCGGAAUGUGU ....(((.(((((((((((......(((((.((((...)))).)).))).---------.....((....)).))))))))))-)((((((......)))))))))...... ( -38.10) >DroAna_CAF1 5726 100 + 1 CGUAUCCUGCGGAAUGUGCAUUUUCG---------AUGCGAUGUGGCGCGCUUUUUCGAUCUAACGGUAUCA-UCACGUUUCGAAGAAUCUUCACG--UUUUCAUGAUAUAU .(((((.((.((((((((........---------..(((......)))(.((((((((...((((......-...)))))))))))).)..))))--)))))).))))).. ( -23.10) >consensus CGUAUCCUUCGGAAUGUGCAUUCUCGCGCUCGUCGAUCCGAUCGGCAACG_________CAUAACGGUAACGGGCACGUUCUG_GGAACCCCGACUUGGGUUCGGAAUGUGU ....(((..((((((((((........(((.(((.....))).)))..................((....)).))))))))))..((((((......)))))))))...... (-24.03 = -25.78 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:20 2006