| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,996,078 – 16,996,183 |
| Length | 105 |
| Max. P | 0.901303 |
| Location | 16,996,078 – 16,996,183 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 76.18 |
| Mean single sequence MFE | -43.00 |
| Consensus MFE | -23.08 |
| Energy contribution | -22.91 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.54 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.901303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16996078 105 - 23771897 -----CCGCUC---CUCCAUUGCAGUUGCAUAUGUGCCGCUGGAUGCUGCUGGUCAUCGGAGUCUGUUGCCUGAUGGGCAGCUCGUCGGGCAGCUUCUGCUCCCUGGAGCGGA -----((((((---(.......((((.(((....))).))))(((((.....).))))(((((..(((((((((((((...)))))))))))))....)))))..))))))). ( -51.80) >DroPse_CAF1 5591 98 - 1 ---------------UCUCUUGCAGUUCAAUCUGUGCCGGUGGACACUGCUGGUGAUCAGCGUAUUCUGUCUGCUGAAGGAGUCAUCGGGCAGCUUUUGCUCCAUGGAGAAGA ---------------(((((((.(((..((.((((.(((((((.(((.....))).((((((.........)))))).....))))))))))).))..))).)).)))))... ( -30.10) >DroEre_CAF1 6866 105 - 1 -----CCGCUC---CUCCAUUGCAGUUGAAUAUGUGCCGCUGGAUGCUGCUGGUCCUCGGAGUCUGUUGUCUGAUGGGCAGCUCGUCGGGCAGCUUCUGCUCCCUGGAGCGGA -----((((((---(.(((..(((((...................)))))))).....(((((..(((((((((((((...)))))))))))))....)))))..))))))). ( -45.31) >DroYak_CAF1 3240 108 - 1 -----CCGCUCCUCCUCCAUUGCAGUUGAAUAUGUGCCGCUGGAUGCUGCUGGUCCUCGGAGUCUGCUGCCUGAUGGGCAGCUCGUCGGGCAGCUUCUGCUCCCUGGAGCGGA -----(((((((....(((..(((((...................)))))))).....(((((..(((((((((((((...)))))))))))))....)))))..))))))). ( -50.41) >DroAna_CAF1 3195 110 - 1 AUUCGGCAAUC---UUUCCUUGCAGUUCAAUGUGUGCCGCUGGAUGCUGAUCGCCCUGGGAGUUUGUUGCCUGCUGGGCAGUUCCACGGGCAGCUAUUGCUCCCUGGAGCGGA ..((((((...---..(((..((.((.(.....).)).)).)))))))))((((((.((((((..((((((((.((((....))))))))))))....)))))).)).)))). ( -48.70) >DroPer_CAF1 5595 98 - 1 ---------------UCUCUUGCAGUUCAAUCUGUGCCGGUGGACACUGCUGGUGAUCAGCGUAUUCUGUCUGCUGAAGGAGUCCUCGGGCAGCUUUUGCUCCAUGGAGAAGA ---------------.(((((((((......))))..(((..((((.(((((.....))))).....))))..))).)))))(((...((.(((....)))))..)))..... ( -31.70) >consensus _____CCGCUC___CUCCAUUGCAGUUCAAUAUGUGCCGCUGGAUGCUGCUGGUCAUCGGAGUCUGCUGCCUGAUGGGCAGCUCGUCGGGCAGCUUCUGCUCCCUGGAGCGGA .....................(((((...................)))))...............((((((((.(((.....))).)))))))).(((((((....))))))) (-23.08 = -22.91 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:19 2006