Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,992,212 – 16,992,313 |
Length | 101 |
Max. P | 0.611529 |
Location | 16,992,212 – 16,992,313 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 93.40 |
Mean single sequence MFE | -24.50 |
Consensus MFE | -22.86 |
Energy contribution | -22.87 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.07 |
Mean z-score | -1.61 |
Structure conservation index | 0.93 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611529 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16992212 101 - 23771897 UAAGGCCACGGUUAAGUCUAAUUAGGUGUUGGGCAGGCAAAAAGGCCAUUGGCAAGCGAUUUUCGUGGUGAAAAAUCAUCAACAAGAUUAGUUAACAACGA ....((((.......(((((((.....))))))).(((......)))..)))).(((((((((..((((((....))))))..)))))).)))........ ( -25.30) >DroSim_CAF1 3769 101 - 1 UAAGGCCACGGUUAAGUCUAAUUAAGAGUUGGACAGGCAAAAGGGCCAUUGGCAAGCGAUUUUCGCGGUGAAAAAUCAUCAACAAGAUUAGUUAACAAUGA ...((((...(((..(((((((.....))))))).))).....)))).(((((..(((.....)))(((((....)))))..........)))))...... ( -26.40) >DroYak_CAF1 3967 101 - 1 UAAGGCCACGGUUAAGUCUAUUUAAGAGUUGGGCAGUCAAAAGGGACAUUGGCAAGCGAUUUUCCUGGUGAAAAAUCAUCAACAAGAUUAGUUAACAACGA ....((((.(.((((.(((.....))).)))).).(((......)))..)))).(((((((((..((((((....))))))..)))))).)))........ ( -21.80) >consensus UAAGGCCACGGUUAAGUCUAAUUAAGAGUUGGGCAGGCAAAAGGGCCAUUGGCAAGCGAUUUUCGUGGUGAAAAAUCAUCAACAAGAUUAGUUAACAACGA ....((((.......(((((((.....))))))).(((......)))..)))).(((((((((..((((((....))))))..)))))).)))........ (-22.86 = -22.87 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:17 2006