Locus 6347

Sequence ID 3L_DroMel_CAF1
Location 16,989,678 – 16,989,798
Length 120
Max. P 0.525275
window10169

overview

Window 9

Location 16,989,678 – 16,989,798
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.58
Mean single sequence MFE -35.75
Consensus MFE -33.39
Energy contribution -33.08
Covariance contribution -0.31
Combinations/Pair 1.09
Mean z-score -1.36
Structure conservation index 0.93
SVM decision value -0.02
SVM RNA-class probability 0.525275
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16989678 120 - 23771897
GGUCGUCAAAUUCGCAUUUUCCGCACUGUGACGCAAUCCACGGGUUGAAAAUUCACUGCAAUUGCGUUGACUAUGCCGCAAUAUUUCCGGAUCCGGACAAUUGCAUCGAUUCGUUUUGCU
....((((.....((.......))....))))((((...(((((((((....(((.(((....))).))).......(((((...((((....))))..))))).))))))))).)))). ( -34.00)
>DroSec_CAF1 1209 120 - 1
GGUUGUCAAAUUCGCAUUUUCUGCACUGUGACGCAAUCCACGGGUCGAAAAUUCACUGCAAUUGCGUUGACUAUAUCGCAAUGUUUCCGGAUCCGGGCAAUUGCAUCGAUUCGUUUCGCU
((.(((((.....(((.....)))....)))))....))(((((((((........(((((((((((((.(......)))))....(((....)))))))))))))))))))))...... ( -34.90)
>DroSim_CAF1 1240 120 - 1
GGUCGUCAAAUUCGCAUUUUCCGCACUGUGACGCAAUCCACGGGUCGAAAAUUCACUGCAAUUGCGUUGACUAUGUCGCAAUGUUUCCGGAUCCGGGCAAUUGCAUCGAUUCGUUUCGCU
((.(((((.....((.......))....)))))....))(((((((((........(((((((((((.(((...))))).......(((....)))))))))))))))))))))...... ( -35.90)
>DroYak_CAF1 1433 120 - 1
GGUCGUCAAAUUCGCAUUUCCCGCACUGUGACGCAAUCCACGGGUCGAAAAUUCACUGCAGUUGCGUUGCCUAGCCCGCAAUGUUUCCGGAUCCGGGCAAUUGCAUCGAUUCGUUUCGCU
((.(((((.....((.......))....)))))....))(((((((((........((((((((((((((.......)))))....(((....)))))))))))))))))))))...... ( -38.20)
>consensus
GGUCGUCAAAUUCGCAUUUUCCGCACUGUGACGCAAUCCACGGGUCGAAAAUUCACUGCAAUUGCGUUGACUAUGCCGCAAUGUUUCCGGAUCCGGGCAAUUGCAUCGAUUCGUUUCGCU
((.(((((.....((.......))....)))))....))(((((((((........(((((((((((((.(......)))))....(((....)))))))))))))))))))))...... (-33.39 = -33.08 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:08 2006