Locus 6346

Sequence ID 3L_DroMel_CAF1
Location 16,987,633 – 16,987,735
Length 102
Max. P 0.512785
window10168

overview

Window 8

Location 16,987,633 – 16,987,735
Length 102
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 81.02
Mean single sequence MFE -37.08
Consensus MFE -26.52
Energy contribution -28.19
Covariance contribution 1.67
Combinations/Pair 1.04
Mean z-score -1.17
Structure conservation index 0.72
SVM decision value -0.04
SVM RNA-class probability 0.512785
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16987633 102 - 23771897
AAGAGCUGUGAGAGCCUAUUCUCGGCCAGCUCCCGGGAGUCGGCCAGCCUGAUCUACCAGCGCAGCAAGCCGCCACCGCCCCAACAACGUGGCGGCGUGAAG---
....((((((((((....)))))((((.((((....)))).)))).((.((......)))))))))..((((((((............))))))))......--- ( -44.40)
>DroVir_CAF1 1505 90 - 1
AAAAGCUGUGAGAGCCUCUACUCGGCCAGCUCUCGCGAAUCCGCCAGCCAGAUCUAUCAGCGCAAGCAGCCGGCG------------C---GCGGCUUGAAGGCC
....(((((((((((..((....))...)))))))))....((((.((..((....)).((....)).)).))))------------.---))((((....)))) ( -32.00)
>DroSec_CAF1 1592 99 - 1
AAGAGCUGUGAGAGCCUAUUCUCGGCCAGCUCCCGGGAGUCGGCCAGCCUGAUCUACCAGCGCAGCAAGGCGCCACCG---CAACAACGUGGCGGCGUUAAG---
....((((((((((....)))))((((.((((....)))).)))).((.((......)))))))))..((((((.(((---(......)))).))))))...--- ( -44.50)
>DroEre_CAF1 1530 99 - 1
AAGAGCUGUGAGAGCCUAUUGUCGGCCAGCUCCCGGGAGUCGGCCAGCCUGAUCUACCAGCGAAGCAAGCCGCCUCCG---CAACAACGUGGCGGCAUAAAG---
....((((..(((..(....((.((((.((((....)))).)))).))..).)))..)))).......((((((..((---......)).))))))......--- ( -38.10)
>DroYak_CAF1 1561 99 - 1
AAGAGCUGUGAGAGCCUAUUCUCGGCCAGCUCCCGGGAGUCGGCCAGCCUGAUCUACCAGCGAAGCAAGCCGCCUCCG---CAACAACGUGGCGCCUUAAAG---
....((((.(((((....)))))((((.((((....)))).))))............)))).....(((.((((..((---......)).)))).)))....--- ( -33.30)
>DroAna_CAF1 1542 96 - 1
AAGAGCUGCGAGAGCCUGUUCUCGGCCAGCUCCCGGGAAUCGGCCAGUUUGAUCUACCAACGAAAACAGGCGCCGGCC---C---AUCGAGGCGCAAUGAAG---
....((..((.(.(((((((.((((((...((....))...)))).(((.(......)))))).))))))).)))(((---.---.....))))).......--- ( -30.20)
>consensus
AAGAGCUGUGAGAGCCUAUUCUCGGCCAGCUCCCGGGAGUCGGCCAGCCUGAUCUACCAGCGAAGCAAGCCGCCACCG___CAACAACGUGGCGGCAUGAAG___
....((((.(((((....)))))((((.((((....)))).))))............)))).......((((((................))))))......... (-26.52 = -28.19 +   1.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:07 2006