| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,987,237 – 16,987,341 |
| Length | 104 |
| Max. P | 0.658069 |
| Location | 16,987,237 – 16,987,341 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 78.08 |
| Mean single sequence MFE | -26.96 |
| Consensus MFE | -16.22 |
| Energy contribution | -16.58 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.658069 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16987237 104 + 23771897 UAAAAGUAAUC--------A-UACAUACUUAUCCUUGUUGAGCUGACUGUAGUGCUUGUUCUGAUCGCUCAGCGUCAGGAUGAUUUCCUCCUUCUGCUUGAGCUUUAGCUCCA ...(((((...--------.-.......(((((((((((((((.((...(((........))).))))))))))..)))))))...........)))))((((....)))).. ( -25.95) >DroGri_CAF1 1140 107 + 1 ----UG-AUUCUAU-ACUCCGGACUAACUUGUCUUUGAUGAGUUGGCUGAAGUGUUUGUUUUGGUCACUCAGCGACAGAAUCUGUGCCUCCUUCUGCUUCAGCUUCUGCUCAA ----((-(((..((-(((.(((.((((((..((...))..))))))))).))))).......)))))......(((((((.(((.((........))..))).))))).)).. ( -27.80) >DroSec_CAF1 1199 101 + 1 -----UUAAUU---GA---A-AACAUACUUAUCCUUGUUGAGCUGGCUGUAGUGCUUGUUCUGAUCGCUCAGCGACAGGAUGAUUUCCUCCUUCUGCUUGAGCUUUAGCUCCA -----......---..---.-((((..........))))((((((((......))...........((((((((..((((.(....).))))..))).)))))..)))))).. ( -24.40) >DroSim_CAF1 574 101 + 1 -----GUAAUU---GA---A-AACAUACUUAUCCUUGUUGAGCUGGCUGUAGUGCUUGUUUUGAUCGCUCAGCGUCAGGAUGAUUUCCUCCUUCUGCUUGAGCUUUAGCUCCA -----......---..---.-((((..........))))((((((((......))...........((((((((..((((.(....).))))..))).)))))..)))))).. ( -24.50) >DroYak_CAF1 1165 104 + 1 UAU--UGGUUU---UA---U-UACAUACUUCUCCUUGUUGAGCUUGCUGUAGUGUUUGUUCUCAUCACUCAGCGACAGUAUGAUGGCCUCCUUCUGCUUGAGCUUAAGCUCCA ...--.((((.---..---.-..((((((.(((......))).((((((.((((..((....)).)))))))))).))))))..))))...........((((....)))).. ( -23.90) >DroAna_CAF1 1125 104 + 1 U----GUAAUA---GAGG-A-CACCCACUUGUCCUUGUUGAGCUGACUGUAGUGCUUGUUCUGGUCGCUCAGCGACAGGAUAAUGGCUUCCUUCUGCUUCAGCUUCUGCUCCA .----......---((((-(-((......)))))))((.(((((((..((((.((((((((((.((((...)))))))))))..)))......)))).)))))))..)).... ( -35.20) >consensus _____GUAAUU___GA___A_AACAUACUUAUCCUUGUUGAGCUGGCUGUAGUGCUUGUUCUGAUCGCUCAGCGACAGGAUGAUUGCCUCCUUCUGCUUGAGCUUUAGCUCCA .......................................((((((((((.((((.((.....)).))))))))(.(((((.((.....)).))))))........)))))).. (-16.22 = -16.58 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:06 2006