Locus 6344

Sequence ID 3L_DroMel_CAF1
Location 16,982,406 – 16,982,526
Length 120
Max. P 0.783990
window10166

overview

Window 6

Location 16,982,406 – 16,982,526
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.28
Mean single sequence MFE -39.44
Consensus MFE -27.41
Energy contribution -27.08
Covariance contribution -0.33
Combinations/Pair 1.28
Mean z-score -3.12
Structure conservation index 0.70
SVM decision value 0.57
SVM RNA-class probability 0.783990
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16982406 120 + 23771897
UGAGUUCCUGAACAUCUGCCAGGUGCACGGCAUGCCCAAGAUAAUGGGCGUACUUACCCACCUGGACAUGAUCAAGAACCCCAAGCAGCUGAGGAAACGAAAGAAGGAACUGAAGCACCG
(.(((((((((.(((...(((((((...((.(((((((......))))))).))....)))))))..))).)).....((.((......)).))...(....).))))))).)....... ( -39.00)
>DroVir_CAF1 3435 120 + 1
CGAGUUCCUCAAUAUAUGCCAGGUACACGGCAUGCCCAAGAUAAUGGGUGUGCUGACGCAUCUGGACAUGAUCAAGAAUCCCAAACAGCUGCGCAAACGCAAAAAGGAACUGAAGCAUCG
..(((((((.....((((((((((.(.(((((((((((......)))))))))))..).)))))).))))...................((((....))))...)))))))......... ( -40.40)
>DroGri_CAF1 3639 120 + 1
UGAGUUUCUCAACAUUUGCCAGGUGCACGGCAUGCCCAAGAUUAUGGGCGUACUUACGCACCUGGACAUGAUCAAGAAUCCGAAACAAUUGCGCAAGCGCAAAAAAGAGCUCAAGCAUCG
(((((((.....(((...((((((((..((.(((((((......))))))).))...))))))))..)))..................(((((....)))))....)))))))....... ( -42.00)
>DroWil_CAF1 3572 120 + 1
UGAGUUCCUCAACAUAUGCCAAGUACAUGGCAUGCCAAAGAUUAUGGGCGUCCUCACGCAUUUGGAUAUGAUCAAGAAUCCCAAACAAUUGAGGAAGCGCAAAAAGGAACUGAAACAUCG
(.(((((((.....(((((((......)))))))..........((.((.((((((....(((((...............)))))....)))))).)).))...))))))).)....... ( -34.26)
>DroMoj_CAF1 3407 120 + 1
CGAGUUCCUGAACAUUUGCCAGGUACAUGGCAUGCCCAAGAUCAUGGGCGUGCUAACCCAUUUGGAUAUGAUCAAGAAUCCAAAGCAACUUCGCAAACGGAAGAAGGAGCUGAAGCAUCG
..(((((((.....(((((.((((...(((((((((((......))))))))))).....(((((((..........)))))))...)))).)))))(....).)))))))......... ( -42.30)
>DroAna_CAF1 3491 120 + 1
UGAGUUCCUCAACAUAUGCCAGGUGCAUGGAAUGCCCAAAAUCAUGGGUGUCCUCACUCACCUGGACAUGAUUAAGAAUCCCAAGCAGCUGCGCAAAAGGAAGAAGGAACUGAAGCAUCG
(.((((((((....(((((((((((...(((.((((((......))))))))).....))))))).))))........(((...((......))....))).).))))))).)....... ( -38.70)
>consensus
UGAGUUCCUCAACAUAUGCCAGGUACACGGCAUGCCCAAGAUAAUGGGCGUACUCACGCACCUGGACAUGAUCAAGAAUCCCAAACAACUGCGCAAACGCAAAAAGGAACUGAAGCAUCG
..(((((((...(((...((((((....((.(((((((......))))))).)).....))))))..)))...................((((....))))...)))))))......... (-27.41 = -27.08 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:05 2006