Locus 6342

Sequence ID 3L_DroMel_CAF1
Location 16,974,874 – 16,974,975
Length 101
Max. P 0.654456
window10164

overview

Window 4

Location 16,974,874 – 16,974,975
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 82.58
Mean single sequence MFE -19.17
Consensus MFE -15.76
Energy contribution -15.43
Covariance contribution -0.33
Combinations/Pair 1.14
Mean z-score -1.54
Structure conservation index 0.82
SVM decision value 0.25
SVM RNA-class probability 0.654456
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16974874 101 - 23771897
UAUUUGUUUAGUUUUAUGAAACUUCUAAUGUGCAUAUAGUUCACCAGAGAACUAUCGGGUUUGAAGGUUUCGUUGAGCUUUCCCCUUAUUUUAUUUACAAC
.........(((((.((((((((((.(((.((...(((((((......))))))))).))).))).))))))).)))))...................... ( -20.80)
>DroSec_CAF1 13611 85 - 1
UAUUUGUUUAGUUUUAUGAAGCUUCUAAUGUGCAUAUAGUUGGCCAGAGAACUAUCGAGCUUGGAGGUUUCGU----------------UUUAUUUUUAAC
.....(((.(((...(((((((((((((.((....((((((........))))))...)))))))))))))))----------------...)))...))) ( -19.20)
>DroSim_CAF1 14220 85 - 1
UAUUUGUUUAGUUUUAUGAAGCUUCUAAUGUGCAUAUAGUUGGCCAGAGAACUAUCGGGCUUGGAGGUUUUGU----------------UUUAUUUUUAAC
.....(((.(((...(..((((((((((.((.(..((((((........)))))).).))))))))))))..)----------------...)))...))) ( -17.50)
>consensus
UAUUUGUUUAGUUUUAUGAAGCUUCUAAUGUGCAUAUAGUUGGCCAGAGAACUAUCGGGCUUGGAGGUUUCGU________________UUUAUUUUUAAC
...............(((((((((((((...((..((((((........))))))...)))))))))))))))............................ (-15.76 = -15.43 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:03 2006