| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,971,237 – 16,971,346 |
| Length | 109 |
| Max. P | 0.640547 |
| Location | 16,971,237 – 16,971,346 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 90.12 |
| Mean single sequence MFE | -22.80 |
| Consensus MFE | -22.20 |
| Energy contribution | -22.10 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.640547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16971237 109 - 23771897 AAA--AAAAUGAAUGCUAUUAGUGAUUUAGGGGUAAUCAACUUAAGUU-UAAAGCUUCACAGAUCAUUUUCAGUUUUCACUUGAGAUUUAUGUGCGGUCUUUAGUUUAGGAC ...--....(((.((((.((((....)))).)))).))).((((...(-(((((((.((((....(((((.(((....))).)))))...)))).)).))))))..)))).. ( -19.10) >DroSec_CAF1 10339 109 - 1 AAA---AAAUGAAUACUAUUAGUGAUUUAGGAGUAAUUAACUUAGGUUUUGAAACUUCACAGAUCGUUUUUAGUUUUCACUUGAGAUUUAUGUGCGGUCUUAAGUUUAGGAC ...---....(((.((((..((((((((.(((((....(((....))).....)))))..))))))))..)))).)))((((((((((.......))))))))))....... ( -22.20) >DroSim_CAF1 10515 112 - 1 AAAAAAAAAUGAAUACUAUUAGUGAUUUAGGAGUAAUCAACUUAGGUUUUUUAACUCCACAGAUCAUUUUUAGUUUUCACCUGAGAUUUAUGUGCGGUCUUAAGUUUAGGAC .........((((.((((..((((((((.(((((((..(((....)))..)).)))))..))))))))..)))).))))(((((.(((((.(......).)))))))))).. ( -27.10) >consensus AAA__AAAAUGAAUACUAUUAGUGAUUUAGGAGUAAUCAACUUAGGUUUUAAAACUUCACAGAUCAUUUUUAGUUUUCACUUGAGAUUUAUGUGCGGUCUUAAGUUUAGGAC ..........(((.((((..((((((((.(((((....(((....))).....)))))..))))))))..)))).)))((((((((((.......))))))))))....... (-22.20 = -22.10 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:02 2006