Locus 634

Sequence ID 3L_DroMel_CAF1
Location 1,875,144 – 1,875,252
Length 108
Max. P 0.704248
window972

overview

Window 2

Location 1,875,144 – 1,875,252
Length 108
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 80.29
Mean single sequence MFE -24.43
Consensus MFE -12.16
Energy contribution -13.75
Covariance contribution 1.59
Combinations/Pair 1.18
Mean z-score -2.40
Structure conservation index 0.50
SVM decision value 0.36
SVM RNA-class probability 0.704248
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1875144 108 + 23771897
UUGUCCUUAGUCUGGAUUCGAAUUCGGAUUCAGAUCCCU--CCCCACUCCCCCU-UUCAAUAACCAUUUGGCACAUACUUUUCCAAUAAAGUAUUUCCAA--AAGAUCCGGGA
...((((..(((((((((((....)))))))))))....--.............-...........(((((...(((((((......)))))))..))))--)......)))) ( -25.00)
>DroSec_CAF1 15044 108 + 1
UUGUCCUUAGUCUGGAUUCGGAUGCGGAUUCGGAUCCCG--CCCCACUCCCCCU-UUCAAUAACCAUUUGGCACAUACUUUUCCAAUAAAGUAUUUCCAA--AAGAUUCGGGA
...((((.(((((((((((((((....))))))))))..--.............-...........(((((...(((((((......)))))))..))))--)))))).)))) ( -28.70)
>DroSim_CAF1 15217 108 + 1
UUGUCCUUAGUCUGGAUUCGGAUGCGGAUUCGGAUCCCG--CCCCACUCCCCCU-UUCAAUAACCAUUUGGCACAUACUUUUCCAAUAAAGUAUUUCCAA--AAGAUUCGGGA
...((((.(((((((((((((((....))))))))))..--.............-...........(((((...(((((((......)))))))..))))--)))))).)))) ( -28.70)
>DroEre_CAF1 14832 100 + 1
UUGUCCUUAGUCUGCAUUCAGAUUCGAAUUCGG--------C-CCACUCCCACU-UUCAAUAACCAUUUGGCACAUACUUUUCCAAUAAAGUAUUUCCA---AGGAAUCGGGA
...(((..((((((....))))))(((.(((((--------.-......))...-...........(((((...(((((((......)))))))..)))---))))))))))) ( -17.70)
>DroYak_CAF1 15240 103 + 1
UUGUCCUUAGUCUGGAUUUGGAUUCGAAUCGGA--------CCCCACUCCCCCUUUUCAAUAACCAUUUGGCACAUACUUUUCCAAUAAAGUAUUUCCAA--AGGAAUCGGGA
.........(((((.(((((....)))))))))--------)........(((..(((........(((((...(((((((......)))))))..))))--).)))..))). ( -22.50)
>DroAna_CAF1 17676 96 + 1
UUGCGCCAACUCUGGC--------CGGAACCGGCCCCAUUCCCGCACUCCUCUA-UUCGAUAACCAUUUGGCACAUACUUUUCCAAUAAAGUAUUUACAGCAAGG--------
(((((((((....(((--------((....)))))...............((..-...)).......)))))..(((((((......))))))).....))))..-------- ( -24.00)
>consensus
UUGUCCUUAGUCUGGAUUCGGAUUCGGAUUCGGAUCCC___CCCCACUCCCCCU_UUCAAUAACCAUUUGGCACAUACUUUUCCAAUAAAGUAUUUCCAA__AAGAUUCGGGA
...........(((((((((....)))))))))..............((((............((....))...(((((((......)))))))...............)))) (-12.16 = -13.75 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:15 2006