Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,965,401 – 16,965,495 |
Length | 94 |
Max. P | 0.527541 |
Location | 16,965,401 – 16,965,495 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 69.98 |
Mean single sequence MFE | -21.56 |
Consensus MFE | -3.54 |
Energy contribution | -3.70 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.21 |
Mean z-score | -1.71 |
Structure conservation index | 0.16 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527541 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16965401 94 - 23771897 GAUUCCCGAUUUUGAAUGGUGUCAAAUGGCAGCGA---UGUG---GCAAAUAUAUGGAAAAUAAAAAAACCAGUGGAACUAAU------CUAUACAGAGGG-GAAUU (((((((..(((((..(((((((....)))..(.(---((((---.....))))).)...........))))(((((.....)------)))).)))))))-))))) ( -20.30) >DroSec_CAF1 4637 74 - 1 GGUUCCCGAUUUUGAAUGGUGUCGAAUUGC---------------------AUAUU-GA----AAAAAAGCAGUGGAACUAAU------CUGUACAAAGGG-GAAUU .((((((..(((((.((((.((...(((((---------------------...((-..----..))..)))))...))....------)))).)))))))-)))). ( -15.30) >DroSim_CAF1 4668 82 - 1 GACUCCCGAUUUUGAAUGGUGUCGAAUGGU-----------G---ACAAAUAUAUUUAA----AAAAAAGCAGUGGAACUAAU------CUGUACAAAGGG-GAAUU ...((((..(((((((((.(((((.....)-----------)---)))....)))))))----))....((((..........------))))......))-))... ( -17.60) >DroEre_CAF1 4738 101 - 1 GAUUCCCGAUUUUGAACGGUGUCGAAUGGCAGCGAAGGUGUGGUGGCAAAUGAAUGG-A----AAUGGAGCAGUGUCACCAACACAGCAAUAUACAGAGGG-GAAUU (((((((..(((((..((.((((....)))).))...(((((((((((..((.((..-.----.))....)).))))))).)))).........)))))))-))))) ( -32.40) >DroYak_CAF1 4557 99 - 1 GAUUCCCGAUUGUGAACGGUGUCGAAUGCCAGCGAAGGUGUG---GCGAAUAAAUGG-A----AAAAUGGCGGUGGAACUAAUACAGCACUAGACAGAGGGUGAAUU (((((((.((((....))))(((...(((((((....)).))---))).........-.----....(((.(.((.........)).).))))))....)).))))) ( -22.20) >consensus GAUUCCCGAUUUUGAAUGGUGUCGAAUGGCAGCGA___UGUG___GCAAAUAUAUGG_A____AAAAAAGCAGUGGAACUAAU______CUAUACAGAGGG_GAAUU (((((((...(((((......))))).............................................((.....))...................)).))))) ( -3.54 = -3.70 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:00 2006