| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,964,701 – 16,964,819 |
| Length | 118 |
| Max. P | 0.513494 |
| Location | 16,964,701 – 16,964,819 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.66 |
| Mean single sequence MFE | -43.57 |
| Consensus MFE | -28.42 |
| Energy contribution | -29.17 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.65 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16964701 118 + 23771897 CGGCAGCCAGUGCACCUUCAGAGCCGUUCCGCAAAAGGACAUCGGCAACGAGCCAAACACCAUUUCGCCCACCGGCGUGAUGUCGGCUCCCGAGGGUCGAUUGUGCUGUUUAAAAAUA-- .((((((((((..((((((.((((((..........((...(((....))).))......((((.((((....)))).)))).))))))..))))))..)))).))))))........-- ( -46.80) >DroVir_CAF1 3760 120 + 1 CGGCAGCCAGUGCACCUUGAGCGCGGUGCCGCAGAAGGACAUGGCCAGCGAGCCGAAGACCAUCUCGCCAAUGGGCGUAAUAUCCGCGCCCGUCGGACGAUUGUGCUGCACAAGAAACGA .((((.((.((((.......))))))))))((((..((...((((......))))....))...(((((.((((((((.......)))))))).)).))).....))))........... ( -44.70) >DroPse_CAF1 3983 115 + 1 CGGCAGCCAGUGCACCUUGAGGGCGGUUCCACAGAAGGACAUCGGCAGCGAGCCAAAGACCAUCUCGCCCAGUGGCGUGAUAUCCGCUCCAGAGGGGCGAUUGUGCUGCAAAGGG----- ..(((((((((((.((((..((((((.(((......)))....(((.....))).......(((.((((....)))).)))..))))))..)))).)).)))).)))))......----- ( -47.00) >DroGri_CAF1 3805 117 + 1 CGGCAGCCAGUGCACCUUCAGCGCCGUGCCACAAAACGACAUCGCCAAGGAGCCAAAGACCAUCUCACCAAUGGGCAUAAUAUCCGCGCCAGUCGGACGAUUGUGCUGUUAA---AUCGA .(((.((....)).((((..(((.(((........)))....))).)))).))).....((((.......))))(((((((.(((((....).))))..)))))))......---..... ( -29.20) >DroAna_CAF1 3744 118 + 1 CGGCAGCCAGUGAACCUUCAGGGCCGUGCCGCAAAAGGACAUCGGCAACGAGCCGAACACCAUCUCGCCCAGCGGUGUGAUGUCGUCACCGUUUGGCCGAUUGUGCUGAAAACCAAGA-- ((((((((..(((....))).)))..))))).....((...(((((.....))))).(((.(((..(((.(((((((((....)).))))))).))).))).))).......))....-- ( -43.80) >DroPer_CAF1 3838 115 + 1 CGGCAGCCAGUGCACCUUGAGAGCGGUUCCACAGAAGGACAUCGGCAGCGAGCCAAAGACCAUCUCGCCCAGUGGCGUGAUAUCCGCUCCCGAGGGGCGAUUGUGCUGCAAAGGG----- ..(((((((((((.(((((.((((((.(((......)))....(((.....))).......(((.((((....)))).)))..)))))).))))).)).)))).)))))......----- ( -49.90) >consensus CGGCAGCCAGUGCACCUUCAGAGCCGUGCCACAAAAGGACAUCGGCAACGAGCCAAAGACCAUCUCGCCCAGCGGCGUGAUAUCCGCUCCCGAGGGACGAUUGUGCUGCAAAAGAA____ ..(((((((((...((....((((((..........((...(((....))).)).......(((.((((....)))).)))..)))))).....))...)))).)))))........... (-28.42 = -29.17 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:59 2006