Locus 6337

Sequence ID 3L_DroMel_CAF1
Location 16,963,386 – 16,963,493
Length 107
Max. P 0.667697
window10159

overview

Window 9

Location 16,963,386 – 16,963,493
Length 107
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 78.84
Mean single sequence MFE -21.93
Consensus MFE -14.19
Energy contribution -14.47
Covariance contribution 0.28
Combinations/Pair 1.17
Mean z-score -1.45
Structure conservation index 0.65
SVM decision value 0.28
SVM RNA-class probability 0.667697
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16963386 107 - 23771897
AUGGUUUUAGAUUUA--UAUCUAAUUAGUUUUUUUGUUUUGUUUAU---UUGCAGUUUUAUUAGCACCAUGCUGACGGGAAUUCUUACUCAUCACCUCGGAUGGGUAGCCAC
.((((.((((((...--.))))))..((..((((((((((((....---..)))).......(((.....)))))))))))..))((((((((......)))))))))))). ( -23.80)
>DroSec_CAF1 2452 97 - 1
-----UUUAGAUUUA--UAUCUAAUUAAUUUUUUC-----GUUUAU---UUGCAGUUUUAUUAGCACCAUGCUGACGGGAAUUCUUACUCAUCACCUCGGAUGGGUAGCCAC
-----.((((((...--.))))))...........-----......---..((..(((..(((((.....)))))..))).....((((((((......))))))))))... ( -20.60)
>DroSim_CAF1 2439 97 - 1
-----UUUAGAUUUA--UAUCUAAUUAAUUUUUUC-----GUUUAU---UUGCAGUUUUAUUAGCACCAUGCUGACGGGAAUUCUUACUCAUCACCUCGGAUGGGUAGCCAC
-----.((((((...--.))))))...........-----......---..((..(((..(((((.....)))))..))).....((((((((......))))))))))... ( -20.60)
>DroEre_CAF1 2449 104 - 1
AUGGUUAUAAAUGUA--UAUCUAAUUU-UAAAUUU-----GUUUAUUUCUUGCAGUUUUAUAAGCACCAUGCUGACGGGAAUUCUUACUCACCACCUCGGAUGGGUAGCCAC
.(((((((.......--..........-......(-----((((((.............)))))))((((.((((.((................))))))))))))))))). ( -20.01)
>DroYak_CAF1 2440 100 - 1
AUGGUUAUAAAUUUA--GAUCUAAUUA-UACAUUU-----GUUUAU----GGCAGUUUUAUUAGCACAAUGCUGACGGGAAUCCUUACUCAUCAUCUCGGAUGGGUAGCCAC
...............--..........-.......-----.....(----(((..(((..(((((.....)))))..))).....((((((((......)))))))))))). ( -22.20)
>DroAna_CAF1 2460 104 - 1
CUGGAUAUCCUCUCAGUGAUGUAAUUAAGCUCCAC-----AAUUCC---UUACAGCUUUAUUAGCACCAUGUUGACCGGCAUUCUCACCCACCACCUUGGCUGGGUGGCCAC
..((....))((...(((.((((((.(((((....-----......---....))))).))).))).)))...))..(((.....((((((((.....)).))))))))).. ( -24.34)
>consensus
AUGGUUAUAGAUUUA__UAUCUAAUUAAUUUUUUC_____GUUUAU___UUGCAGUUUUAUUAGCACCAUGCUGACGGGAAUUCUUACUCAUCACCUCGGAUGGGUAGCCAC
...................................................((..(((..(((((.....)))))..))).....((((((((......))))))))))... (-14.19 = -14.47 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:58 2006