Locus 6333

Sequence ID 3L_DroMel_CAF1
Location 16,955,009 – 16,955,107
Length 98
Max. P 0.995208
window10153

overview

Window 3

Location 16,955,009 – 16,955,107
Length 98
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 91.59
Mean single sequence MFE -29.32
Consensus MFE -24.62
Energy contribution -23.98
Covariance contribution -0.64
Combinations/Pair 1.16
Mean z-score -2.37
Structure conservation index 0.84
SVM decision value 2.55
SVM RNA-class probability 0.995208
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16955009 98 + 23771897
AGUCGGUGUGUAGCCGCGUGAAAAAGUGCUUUAAAUU-CGUUUGAAAAUUGGCAAAUUCGUUAGUUUUUAGAGUAUUUGAGGUACGGCACCUGCCACAU
.(.((((.....)))))(((.....(((((((((((.-(.(((((((((((((......)))))))))))))).)))))))))))(((....))).))) ( -31.80)
>DroSec_CAF1 30417 97 + 1
AGUCGGUGUGUAGCCGCGUGAAUAAGUGCUUUGAAUUUAGUUUGAAAAUUGGCAAAUUCG--AGUUUUUAGAGUAUUUGAGGUACGGCACCUGCCACAU
.(.((((.....)))))(((.....((((((..((..((.((((((((((.(......).--)))))))))).))))..))))))(((....))).))) ( -27.10)
>DroSim_CAF1 33516 99 + 1
AGUCGGUGUGUAGCCGCGUGAAUAAGUGCUUUGAAUUUAGUUUGAAAAUUGGCAAAUUCGUUAGUUUUUAGAGUAUUUGAGGUACGGCACCUGCCACAU
.(.((((.....)))))(((.....((((((..((..((.(((((((((((((......))))))))))))).))))..))))))(((....))).))) ( -31.10)
>DroEre_CAF1 30167 97 + 1
AGUCGGUGUCUAGCCCCGUG-AAAAGUGCUUGAAAUU-CGUUUGAAAAUUGCCAAAUUCGUUCAUUUUCAGAGUAUUUGGGGUACGGCACCUGCCACAU
.((.((((((..((((((..-...(((((((((((..-.(..((((..........))))..)..))))).))))))))))))..)))))).))..... ( -27.30)
>DroYak_CAF1 31462 98 + 1
AGUCGGUGUGUAGCCCCGUGGAAAAGUGCUUUAAAUU-CGUUUGAAAAUUGCCAAAUUCGUUAAUUUUCAGAGUAUUUGAAGUACGGCACCUGCCACAU
.((.((((.((.((((....)....(((((((((((.-(.(((((((((((.(......).)))))))))))).)))))))))))))))).)))))).. ( -29.30)
>consensus
AGUCGGUGUGUAGCCGCGUGAAAAAGUGCUUUAAAUU_CGUUUGAAAAUUGGCAAAUUCGUUAGUUUUUAGAGUAUUUGAGGUACGGCACCUGCCACAU
....(((.....)))..(((.....(((((((((((....((((((((((..(......)..))))))))))..)))))))))))(((....))).))) (-24.62 = -23.98 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:52 2006