Locus 6332

Sequence ID 3L_DroMel_CAF1
Location 16,948,024 – 16,948,144
Length 120
Max. P 0.660805
window10152

overview

Window 2

Location 16,948,024 – 16,948,144
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.92
Mean single sequence MFE -35.69
Consensus MFE -21.11
Energy contribution -21.84
Covariance contribution 0.73
Combinations/Pair 1.25
Mean z-score -1.97
Structure conservation index 0.59
SVM decision value 0.27
SVM RNA-class probability 0.660805
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16948024 120 - 23771897
CAAAUCUCUGACUUUCAUCAGUUGCUUUUGCUCCAUGAUCAUCUGCUCACCCUCGAUGGCAUUAACUAGGGUAACAUUAACCGCCUGGUUCAGCAGAAUUUGAUUAUUCGAGUACUGCUU
.......((((......))))..((...(((((.(((((((((((((.(((((.(..........).)))))......((((....)))).))))))...)))))))..)))))..)).. ( -28.40)
>DroVir_CAF1 28571 120 - 1
CUGCACUUCCUCGGCGGCCAGUUGUUUCUGCUCCAUGAUCAUCUGCUCGCCCUCAAUGGCAUUCACCAGGGUCACGUUCACCGCCUGGUUGAGCAGCAGCUGGUUGUUGGAGAUCUGCUU
..(((..((..(((((((((((((...((((((...............(((......)))....((((((.............)))))).)))))))))))))))))))..))..))).. ( -47.42)
>DroPse_CAF1 24151 118 - 1
C-CCUUUCC-GCGUUCAUCAACUGCUUCUGCUCCAUGAUCAUCUGCUCUCCCUCGAUGGCAUUCACUAGGGUCACGUUUACCGCCUGAUUGACCAGGAGCUGGUUGUUGGAGAUCUGCUU
.-.......-(((.((..((((.(((...(((((.........((((.((....)).))))........(((((.(((........)))))))).))))).))).))))..))..))).. ( -31.40)
>DroMoj_CAF1 28316 120 - 1
CUUCUCCUCCUCCUCGGCCAGCUGCUUCUGCUCCAUGAUCAUUUGCUCGCCUUCAAUGGCAUUCACCAGUGUCACAUUCACUGCCUGGUUGAGCAGCAGCUGAUUGUUGGACACCUGCUU
..........(((.((..((((((((...((((...(((((.......(((......)))......(((((.......)))))..)))))))))))))))))..))..)))......... ( -35.40)
>DroAna_CAF1 24060 120 - 1
CAACUCCCUGAUCUUCACCAGCUGCUUCUGCUCCAUGAUCAUCUGCUCGCCCUCAAUGGCGUUCACCAGAGUAACGUUCACCGCCUGGUUGAGCAGGAUCUGGUUGUUGGAGAUCUGCUU
.........((((((((.(((((((....)).....((((..(((((((((......)))....(((((.((..........))))))).)))))))))).))))).))))))))..... ( -40.10)
>DroPer_CAF1 16155 118 - 1
C-CCUUUCC-GCGUUCAUCAACUGCUUCUGCUCCAUGAUCAUCUGCUCUCCCUCGAUGGCAUUCACUAGGGUCACGUUUACCGCCUGAUUGACCAGGAGCUGGUUGUUGGAGAUCUGCUU
.-.......-(((.((..((((.(((...(((((.........((((.((....)).))))........(((((.(((........)))))))).))))).))).))))..))..))).. ( -31.40)
>consensus
C_ACUCUCC_ACGUUCACCAGCUGCUUCUGCUCCAUGAUCAUCUGCUCGCCCUCAAUGGCAUUCACCAGGGUCACGUUCACCGCCUGGUUGAGCAGGAGCUGGUUGUUGGAGAUCUGCUU
.......................((.....((((((((((((((((((..((.....)).....((((((.............)))))).)))))))...)))))).)))))....)).. (-21.11 = -21.84 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:51 2006