Locus 6331

Sequence ID	3L_DroMel_CAF1
Location	16,947,655 – 16,947,745
Length	90
Max. P	0.611355

overview

Window 1

Location	16,947,655 – 16,947,745
Length	90
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	85.42
Mean single sequence MFE	-28.54
Consensus MFE	-22.52
Energy contribution	-22.36
Covariance contribution	-0.16
Combinations/Pair	1.21
Mean z-score	-1.58
Structure conservation index	0.79
SVM decision value	0.16
SVM RNA-class probability	0.611355
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16947655 90 - 23771897
AACCAUAUCUUCGGAUGUGCUAUCCUUGAUGGACUCCUCAUCUAUU---GAUACUUCCUCCCGGAUUUGGGCCUUCGUGGGUGAGGGACUCGC
...((((((....))))))...(((.....))).(((((((((((.---((..(((((....)))...))....)))))))))))))...... ( -27.00)
>DroSec_CAF1 23238 90 - 1
AACCAUAUCUUCGGAUGUGUUUUCCUUGACGGGCUCUUCAUCUAUG---GCUACUUCCUCCCGGAUUUGGCCCUUCGUGGGUGAGGGACUCGC
...((((((....))))))..........((((..(((((((((((---((((..(((....)))..)))))....))))))))))..)))). ( -36.90)
>DroSim_CAF1 26278 90 - 1
AACCAUAUCAUCGGAUGUGUUCUCCUUGACGGACUCUUCAUCUAUG---GAUACUUCCUCCCGGAUUUGGCCCUUCGUGGGUGAGGGACUCGC
...((((((....))))))..........(((..((((((((((((---((..(.(((....)))...)....))))))))))))))..))). ( -24.20)
>DroEre_CAF1 22941 90 - 1
CACCUCAUCAUGGGAUGGAUUCUCGUUGAUUGGCUCCUCAUCUAUU---GAUACUUCACCCCGGAUUCUGCCCUUCGUGGGUGAGGGACUCGC
..((..(((((((((.....))))).)))).))......(((....---))).((((((((((((........)))).))))))))....... ( -25.40)
>DroYak_CAF1 23770 93 - 1
AACCUUAUCAUGGGAUGAGUUCUCACUGAUGGGCUCCUCAUCUAUUAAAGACACUUCCUCCCGGAAUCGGCCCUUCGUGGGUGAGGGACUCGC
......(((((((((.....))))).))))(((..((((((((((.((.(.(..((((....))))...).).)).))))))))))..))).. ( -29.20)
>consensus
AACCAUAUCAUCGGAUGUGUUCUCCUUGAUGGGCUCCUCAUCUAUU___GAUACUUCCUCCCGGAUUUGGCCCUUCGUGGGUGAGGGACUCGC
...((((((....))))))..........((((.(((((((((((..........(((....)))...........))))))))))).)))). (-22.52 = -22.36 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:49 2006