Locus 6330

Sequence ID 3L_DroMel_CAF1
Location 16,947,341 – 16,947,435
Length 94
Max. P 0.866818
window10150

overview

Window 0

Location 16,947,341 – 16,947,435
Length 94
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 79.51
Mean single sequence MFE -31.72
Consensus MFE -20.86
Energy contribution -22.20
Covariance contribution 1.34
Combinations/Pair 1.24
Mean z-score -1.92
Structure conservation index 0.66
SVM decision value 0.85
SVM RNA-class probability 0.866818
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16947341 94 + 23771897
GGGGUCCGCGAAUCAAAAGGAAUCUCAAGCUACCACCGGGCAGUGUGGGCAUUCCAGAACUGGCAAU--AGUCAGCGAGGAACUGAAGACUC----CUAC
((((((..((..((....(((((((((.(((.((....)).))).)))).)))))....(((((...--.)))))....))..))..)))))----)... ( -30.10)
>DroSec_CAF1 22924 94 + 1
GGGGUCCGCGAAUCAAAAGGAAUCUCAAGCUACCACCGGGUAGUGUGGGCAUUCCAGAACUGGCGAU--AGUCAGCGAGGAAUUGAAGACUC----CUAC
((((((..(((.((....(((((((((.((((((....)))))).)))).)))))....(((((...--.)))))....)).)))..)))))----)... ( -37.60)
>DroSim_CAF1 25964 94 + 1
GGGGUCCGCGAAUCAAAAGGAAUCUCAAGCUACCACCGGGUAGUGUGGGCAUUCCAGAACUGGCGAU--AGUCAGCGAGGAAUUGAAGACUC----CUAA
((((((..(((.((....(((((((((.((((((....)))))).)))).)))))....(((((...--.)))))....)).)))..)))))----)... ( -37.60)
>DroEre_CAF1 22627 94 + 1
GGGGUCCCCGCAUCAAAAGGAAUCUCAAGCUGCCGCCGGGUAGUGUGAAUAUUCCAGAACUGGCGAU--AGUCAGCGAGGAACUGAAACCAC----CAGC
(((((((.(((.......(((((.(((.((((((....)))))).)))..))))).....((((...--.))))))).))).......)).)----)... ( -30.41)
>DroYak_CAF1 23456 94 + 1
GGGGUUUACGAAGCAAAAGGAAUCUCAAACUACCACCGAGUAGUGCGGGUAUUCCCGAACUGGCGAU--AGUCAGCGAGGAACUAAAGACUC----CUAC
(((((((...........((((((((..(((((......)))))..))).)))))((..(((((...--.))))))).........))))))----)... ( -26.90)
>DroAna_CAF1 23404 100 + 1
AAGGUUCCAGAGUCAAGAGGAAUCUCAAGCUGCCCGCGGGAUGUGUGGGAAUCCCCGAGGAGGAGAUGAAGGCGACGACGGAUAGAGGCAUCUCUGGUAU
.....(((...(((..(((....)))..(((.((((((.....)))))).(((.((.....)).)))...))))))...)))(((((....))))).... ( -27.70)
>consensus
GGGGUCCGCGAAUCAAAAGGAAUCUCAAGCUACCACCGGGUAGUGUGGGCAUUCCAGAACUGGCGAU__AGUCAGCGAGGAACUGAAGACUC____CUAC
....(((.((........(((((((((.((((((....)))))).)))).)))))....(((((......))))))).)))................... (-20.86 = -22.20 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:48 2006