Locus 633

Sequence ID 3L_DroMel_CAF1
Location 1,873,306 – 1,873,418
Length 112
Max. P 0.638546
window971

overview

Window 1

Location 1,873,306 – 1,873,418
Length 112
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.34
Mean single sequence MFE -33.02
Consensus MFE -20.60
Energy contribution -20.55
Covariance contribution -0.05
Combinations/Pair 1.23
Mean z-score -1.41
Structure conservation index 0.62
SVM decision value 0.22
SVM RNA-class probability 0.638546
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1873306 112 - 23771897
ACACCGAUCGCCUUGGAGUUGCGGAUGUACUUGGAGGCGUACAGGUGCGUGGUGUCCACGUACUCGAUCUUCGUUCCCAUUUUUUAGAG---AGUGGGGAA-UGCUGCUUUGUCUG---
.....(((((((((.((((.((....)))))).))))).....(((((((((...))))))))).))))....((((((((((....))---)))))))).-..............--- ( -40.90)
>DroVir_CAF1 23648 109 - 1
ACGCCAAUUGCCUUGGAGUUGCGUAUGUACUUGGAAGCGUAUAGAUGCGUCGUAUCGACGUACUCGAUUUUGGUGCCCAUUAUGU----------UUGCUUUUUCUUCUUUUUUUUUUU
.((((((..((.((.((((.((....)))))).)).)).....(((((((((...))))))).))....))))))..........----------........................ ( -22.10)
>DroPse_CAF1 12819 113 - 1
ACUCCAAUCGCCUUCGAGUUGCGUAUGUACUUGGAGGCGUACAGAUGUGUGGUGUCCACGUACUCGAUCUUUGUGCCCAUUUUGCAAAGUCGACUGAGGA---GCCUCUUUGUUUG---
.((((...(((((((((((.((....)))))))))))))..(((....((((...))))....((((.((((((.........))))))))))))).)))---)............--- ( -37.80)
>DroWil_CAF1 17277 110 - 1
ACUCCAAUCGCUUUCGAGUUGCGUAUAUACUUGGAGGCGUACAAAUGCGUGGUGUCCACGUACUCGAUUUUUGUUCCCAUUUUGUAUUU---ACUUCCAG---CACGCUUUGUUGU---
........(((((((((((.........)))))))))))(((((((((((((...)))))))...((.......))....))))))...---.....(((---((.....))))).--- ( -26.40)
>DroAna_CAF1 16061 99 - 1
ACGCCUAUCGCCUUCGAGUUGCGAAUGUACUUGGAGGCGUACAGAUGCGUGGUGUCCACGUACUCGAUUUUCGUUCCCAUUUUG--------------GA---UCGGCUUUGUUUG---
..(((...(((((((((((.((....)))))))))))))....(((((((((...))))))).)).......(.(((......)--------------))---.))))........--- ( -33.10)
>DroPer_CAF1 12515 113 - 1
ACUCCAAUCGCCUUCGAGUUGCGUAUGUACUUGGAGGCGUACAGAUGUGUGGUGUCCACGUACUCGAUCUUUGUGCCCAUUUUGCAAAGUCGACUGAGGA---GCCUCUUUGUUUG---
.((((...(((((((((((.((....)))))))))))))..(((....((((...))))....((((.((((((.........))))))))))))).)))---)............--- ( -37.80)
>consensus
ACUCCAAUCGCCUUCGAGUUGCGUAUGUACUUGGAGGCGUACAGAUGCGUGGUGUCCACGUACUCGAUCUUUGUGCCCAUUUUGUA_AG___ACUGAGGA___GCCGCUUUGUUUG___
........(((((((((((.((....)))))))))))))....(((((((((...))))))).))...................................................... (-20.60 = -20.55 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:14 2006