| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,946,194 – 16,946,306 |
| Length | 112 |
| Max. P | 0.915668 |
| Location | 16,946,194 – 16,946,306 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 75.49 |
| Mean single sequence MFE | -36.87 |
| Consensus MFE | -27.12 |
| Energy contribution | -27.32 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.915668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16946194 112 + 23771897 ---AGCCAA--GCAAAUCCGAAUCAAAACUGCAGCUGUGAGUCGCGGGCAUUUCGCGAUUUCCGUGGCGUGCAAACUUUGCGAUUAUUGUGGAGCAGGCGCAUCAAAAGUGCCAGCG ---.((((.--(.(((((((((......((((.((.....)).))))....)))).))))).).))))..((...(((..(((...)))..)))..(((((.......))))).)). ( -36.20) >DroVir_CAF1 26717 106 + 1 ---AACA--------ACAACAACAACAGUUGCAAUUGUGAAACGCGAGCAUUUCGCGAUUUCCGCGGCGUCCAAACGCUGCGUCUGCUCUGGAGCAAGCGCAUCAGCAGCGCCAGCG ---....--------..........(((..(((.....((((((((((...)))))).))))((((((((....))))))))..))).)))..((..((((.......))))..)). ( -36.20) >DroPse_CAF1 22357 106 + 1 ---C--------AAAAUCAAAAUCAAAGCUGCAAUUGCGAGUCGCGGGCUUUUCGCGAUUUCCGGGGUGUCCAAACGCUUCGAUUGCUGUGGAACAGGCGCAUCAAGAGCGCCAGCG ---.--------...............((((((((((.(((((((((.....))))))))).)(((((((....))))))))))))).........(((((.......)))))))). ( -36.40) >DroYak_CAF1 22315 106 + 1 ---ACCCAA--GCCA------AUCAAAACUGCAGCUGUGAGUCGCGGGCAUUUCGCGAUUUCCGGGGCGUGCAAACCUUGCGAUUGUUGUGGAGCAGGCGCAUCAAGAGUGCCAGCG ---..(((.--..((------(((......((..(((..((((((((.....))))))))..))).))..(((.....))))))))...))).((.(((((.......))))).)). ( -38.60) >DroAna_CAF1 22267 117 + 1 CAAAUCCAAAUCCAAAUCCAAAUAAUAAUUGCAGCUGCGAGUCGCGCGCGUUUCGCGAUUUCCGCGGUGUGCAAACACUACGCUUGUUGUGGAGCAAGCGCAUCAAAAGUGCCAGUG ............................((((((((((((((((((.......)))))))..)))))).))))).((((..(((((((....)))))))((((.....)))).)))) ( -35.70) >DroPer_CAF1 14338 101 + 1 ----------------CCAAAAUCAAAGCUGCAAUUGCGAGUCGCGGGCUUUUCGCGAUUUCCGGGGUGUCCAAACGCUUCGAUUGCUGUGGAGCAGGCGCAUCAAGAGCGCCAGCG ----------------...........(((.((...(((((((((((.....))))))))).((((((((....))))))))...))..)).))).(((((.......))))).... ( -38.10) >consensus ___A_CC_____CAAAUCAAAAUCAAAACUGCAACUGCGAGUCGCGGGCAUUUCGCGAUUUCCGGGGCGUCCAAACGCUGCGAUUGCUGUGGAGCAGGCGCAUCAAGAGCGCCAGCG ............................(((((.....(((((((((.....))))))))).((((((((....)))))))).....))))).((.(((((.......))))).)). (-27.12 = -27.32 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:47 2006