Locus 6328

Sequence ID 3L_DroMel_CAF1
Location 16,944,418 – 16,944,521
Length 103
Max. P 0.765050
window10148

overview

Window 8

Location 16,944,418 – 16,944,521
Length 103
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 82.30
Mean single sequence MFE -29.70
Consensus MFE -20.40
Energy contribution -21.04
Covariance contribution 0.64
Combinations/Pair 1.17
Mean z-score -1.90
Structure conservation index 0.69
SVM decision value 0.51
SVM RNA-class probability 0.765050
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16944418 103 + 23771897
UGUUAUUAUUUUUAUUACUCUCAAAUAUUCGAAGCUACCGAG-GGCAGCAAGCUAGCAAAGAUUUGCCUGGAAAUCCCCAUUUUUGGGGCCGGUUUGCUUUCCG
............................(((.......)))(-((.(((((((..((...(((((......)))))((((....))))))..))))))).))). ( -26.90)
>DroSec_CAF1 20003 104 + 1
UGUCAUUAUUUUUAUAACUUUCAAAUAUGCGAAGCUACCAACAAGCAGCAAGCUGGCAAUGGUUCGCCUGGAUAUCCCCAUUUUGGGGGCCGGUUUGCUUUCCG
............................(.((((((.......)))(((((((((((...((....)).......((((.....))))))))))))))))))). ( -29.80)
>DroSim_CAF1 23000 104 + 1
UGUCAUUAUUUUUAUAACUCUCAAAUAUGCGAAGCUACCAACAAGCAGCAAGAUGGCAAUGGUUCGCCUGGAAAUCCCCAUUUUGGGGGCCGGUUUGCUUUCCG
............................(.((((((.......)))((((((.((((...((....)).......((((.....)))))))).)))))))))). ( -23.50)
>DroEre_CAF1 19665 99 + 1
UAUUAAUUAUUUAAUUACUCGCUAAUAUGCAGAGUUACCGAG----GGCAAUCCGGCAAUUUUUCGACUGGAAAUCCCCAUUUUGG-GGCCGGUUUGCUUUCCG
................((((((......)).))))....(((----(((((.(((((....((((.....))))..(((.....))-)))))).)))))))).. ( -31.60)
>DroYak_CAF1 20438 100 + 1
UUUCAUUAGUUUUAUUACUCGCAAAUAUGCAGAGCUGCCGAG----GGCAAGCUGGCAAUGAUUCCGUUGGAAAUCCCCAUUUUGGGGGCCGGUUUGCUUUCCG
.................((((((....))).))).....(((----(((((((((((.....((((...))))..((((.....)))))))))))))))))).. ( -36.70)
>consensus
UGUCAUUAUUUUUAUUACUCUCAAAUAUGCGAAGCUACCGAG__GCAGCAAGCUGGCAAUGAUUCGCCUGGAAAUCCCCAUUUUGGGGGCCGGUUUGCUUUCCG
..............................................(((((((((((.....(((.....)))..((((.....)))))))))))))))..... (-20.40 = -21.04 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:46 2006