Locus 6327

Sequence ID 3L_DroMel_CAF1
Location 16,931,431 – 16,931,526
Length 95
Max. P 0.653822
window10147

overview

Window 7

Location 16,931,431 – 16,931,526
Length 95
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 85.05
Mean single sequence MFE -36.93
Consensus MFE -26.83
Energy contribution -28.38
Covariance contribution 1.56
Combinations/Pair 1.04
Mean z-score -2.59
Structure conservation index 0.73
SVM decision value 0.25
SVM RNA-class probability 0.653822
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16931431 95 + 23771897
UCGCAUGUUCGCCGCCCCGAACUCCUCGACCGGCGGCGAUCCUAAG-GAUCCGGCGCAAACCCUUGGCGGCGACUUCAAUGCCGCCAAGCACUUUG
.(((......((((((.(((.....)))...))))))(((((...)-))))..)))((((..((((((((((.......))))))))))...)))) ( -40.10)
>DroSec_CAF1 7079 89 + 1
UCGCAUGUUCGCCGCCCCGAACUC------CGGCGGCGAUCCUAAG-GAUCCGGCGCAAAACCUUGGCGGCGACUUCAAUGCCGCCAAGCACUUUG
.........((((((((((.....------))).)))(((((...)-)))).))))((((..((((((((((.......))))))))))...)))) ( -38.70)
>DroSim_CAF1 7024 89 + 1
UCGCAUGUUCGCCGCCCCGAACUC------CGGCGGCGAUCCUAAG-GAUCUGGCGCAAACCCUUGGCGGCGACUUCAAUGCCGCCAAGCACUUUG
..((..(((((((((((((.....------))).)))(((((...)-)))).))))..)))..(((((((((.......)))))))))))...... ( -38.80)
>DroEre_CAF1 6940 92 + 1
UCGCAUGUUCGCCGCCCCGAACUC---GAACGGCGGCGAUCCUAAG-GAUCCGGCGCAAACCCUUGGCGGCGACUUCAAUGCCGCCAAGCACUUUG
.(((......((((((.((....)---)...))))))(((((...)-))))..)))((((..((((((((((.......))))))))))...)))) ( -39.30)
>DroYak_CAF1 7107 92 + 1
UCGCAUGUUCGCCGCCCCGAACUC---GAACGGCGGCGAUCCUAAG-GAUCCGGCGCAAACCCUUGGCGGCGACUUCAAUGCCGCCAAGCACUUUG
.(((......((((((.((....)---)...))))))(((((...)-))))..)))((((..((((((((((.......))))))))))...)))) ( -39.30)
>DroMoj_CAF1 7588 86 + 1
UCGCAUGUUUGCCAGCGAUAAAAC------UGAUACCGUUACAACGGGAUCGGGC----ACCGUUACGGGCGAGUUUAAUGCCGCCAAGCAUUUCG
....(((((((.(.(((.((((.(------((((.((((....)))).)))))((----.(((...)))))...)))).))).).))))))).... ( -25.40)
>consensus
UCGCAUGUUCGCCGCCCCGAACUC______CGGCGGCGAUCCUAAG_GAUCCGGCGCAAACCCUUGGCGGCGACUUCAAUGCCGCCAAGCACUUUG
..((.....((((((((((...........))).)))((((......)))).)))).......(((((((((.......)))))))))))...... (-26.83 = -28.38 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:45 2006