| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,924,387 – 16,924,497 |
| Length | 110 |
| Max. P | 0.903216 |
| Location | 16,924,387 – 16,924,497 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.38 |
| Mean single sequence MFE | -32.25 |
| Consensus MFE | -24.50 |
| Energy contribution | -24.37 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.903216 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16924387 110 + 23771897 AGCCCACACAGCCUUCAGCCUGGCCUUGUCGCCGAUGGCGCACAAGAACUUCGCCACAUGGCUGCUCAAGAGCAGCAGCAGUCAGCAGGUGAGUUUG--GUCGAU--------AUAACCA .(.(((.((.(((........)))(((((((((...)))).)))))....(((((.....((((((....)))))).((.....)).))))))).))--).)...--------....... ( -38.10) >DroVir_CAF1 10 112 + 1 AGCACACACGGCCUUUAGUCUGGCGUUAUCGCCCAUGGCGCACAAAAACUUUGCCACAUGGCUGCUCAGCAGCAACAGCAGUCAAAAGGUAAGCGAAUAUAUUUA--------UUGAGUU .((.......(((........((((....))))...)))...........(((((...((((((((..........))))))))...)))))))...........--------....... ( -26.50) >DroPse_CAF1 10 103 + 1 AGCCCACACAGCCUUCAGUCUGGCUUUGUCGCCAAUGGCGCACAAGAACUUUGCCACAUGGCUGUUCAAGAGCGGCACCAGCCAAAAGGUAAGCUCU--AUCGG---------A------ ...((....((((........))))((((((((...)))).))))((((...(((....))).)))).(((((...(((........)))..)))))--...))---------.------ ( -33.10) >DroGri_CAF1 9 112 + 1 AGCACACACGGCCUUUAGUCUGGCGCUAUCGCCCAUGGCGCACAAAAACUUUGCCACAUGGCUGCUCAACAGCAAUAGCAGUAAAAAGGUAAGCAUUUCUACUAA--------AUAAAUA .((.(....)((((((...((((((((((.....)))))))...........(((....)))((((....))))....)))...))))))..))...........--------....... ( -25.50) >DroMoj_CAF1 9 120 + 1 AGCACACACGGCCUUUAGUCUGGCGUUAUCGCCCAUGGCGCAUAAAAACUUUGCCACAUGGCUGCUCAACAGCAGCAGCAGUCAGAAGGUAAGCGAAUAAUCAUAUAGAAUAUUUGAAUU ..........((((((.(.((((((....))))((((..(((.........)))..))))((((((....))))))...)).).))))))...((((((.((.....)).)))))).... ( -33.30) >DroAna_CAF1 1 107 + 1 -GCCCACACAGCCUUUAGCCUGGCCCUGUCGCCCAAGGCACACAAGAACUUUGCCACAUGGCUGCUCAAGAGCACCAGCAGCCAGCAGGUGAGUCUG----CGGA--------AUGGGAU -.((((....((.....(((((((......)))..)))).....(((...(..((...((((((((..........))))))))...))..).))))----)...--------.)))).. ( -37.00) >consensus AGCACACACAGCCUUUAGUCUGGCGUUAUCGCCCAUGGCGCACAAAAACUUUGCCACAUGGCUGCUCAACAGCAGCAGCAGUCAAAAGGUAAGCGUA__AUCGAA________AUGAAUU .((.......(((........)))..(((((((...)))).)))......(((((...((((((((..........))))))))...))))))).......................... (-24.50 = -24.37 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:44 2006