| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,904,868 – 16,904,976 |
| Length | 108 |
| Max. P | 0.947885 |
| Location | 16,904,868 – 16,904,976 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 75.65 |
| Mean single sequence MFE | -43.58 |
| Consensus MFE | -22.28 |
| Energy contribution | -23.45 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.947885 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16904868 108 - 23771897 AACCGAUUCGGCGGCGUUGGUGGAGUAAGUGUCUCCUCUGAGCGGGGAGCAGGAAGGGGAGGUGCUGCCGGUGGUGGAAGCAGUCGUCGAGGAGG------UGGAGCUGGAGCC .(((..((((((((((..(.(((....((..((((((((..((.....))....))))))))..)).))).)..)(....).)))))))))..))------)...((....)). ( -41.80) >DroSec_CAF1 16477 108 - 1 AACCGAUUCGGCGGCGGUGGUGGAGGUAGUGCCUCCUCUGAGCGGGGAGCAGGAAGGGGAGGUGCCGCCGGUGGUGGAAGCAGUCGUCGAGGAGG------UGGAGCUGGAACC .(((..(((((((((.((..(.(.((..(..((((((((..((.....))....))))))))..)..)).....).)..)).)))))))))..))------)............ ( -45.80) >DroSim_CAF1 16420 108 - 1 AAUCGAUUCGGCGGCGGUGGUGGAGGUAGUGCCUCCUCUGAGCGGGGAGCAGGAAGAGGAGGUGCUGUCGGUGGUGGAAGCAGUCGUCGAGGGGG------UGGAGCUGGAGCC .(((..(((((((((.((..(.(.(..((..((((((((..((.....))....))))))))..))..).....).)..)).)))))))))..))------)...((....)). ( -43.00) >DroEre_CAF1 16734 111 - 1 AACCGGUUCGG---CGGUGGUGGAGGAAGUGCGUCCUCUGAGAGGGGAGCAGGAAGAGGAGAUGCUGCCGGUGGGGGAGGCAGUCGCCGAGGAGGUGGAGUCGGAGCCGGAGCC ..(((((((((---(..............(((.(((((((....((.((((...........)))).))..))))))).))).(((((.....))))).))).))))))).... ( -43.70) >DroYak_CAF1 17231 114 - 1 AACCGAUUCGGCGGCGGUGGUGGAGGAAGUGCGUCCUCUGAGAGGGGCGCAGGAAAGGGAGAUGCUGCCGGUGGGGGAGGCAGUCGCCGAGGUGGAGGAGGUGGAGCCGGAGCC ..(((.(((((((((..............((((((((......))))))))...........((((.((......)).))))))))))))).))).((.((.....))....)) ( -41.90) >DroAna_CAF1 16961 108 - 1 AAUAGAUUCAGUGGGAGUGGAGGAGCAGGU---UCCUCCGAAAGAGGAGGGUCUGGGGUAAGA---GGCAGCGGUGGCGGCAGUCGCCGGGGUGGAGGAUCCUCAAGCUCCGGC ..........((.((((((((((((....)---)))))).......((((((((...((....---.))..(((((((....))))))).......))))))))..))))).)) ( -45.30) >consensus AACCGAUUCGGCGGCGGUGGUGGAGGAAGUGCCUCCUCUGAGAGGGGAGCAGGAAGGGGAGGUGCUGCCGGUGGUGGAAGCAGUCGCCGAGGAGG______UGGAGCCGGAGCC ..((..(((((((((..............(((.(((((.....))))))))...........((((.((......)).)))))))))))))..))................... (-22.28 = -23.45 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:43 2006