Locus 6323

Sequence ID 3L_DroMel_CAF1
Location 16,894,725 – 16,894,831
Length 106
Max. P 0.529155
window10142

overview

Window 2

Location 16,894,725 – 16,894,831
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 83.77
Mean single sequence MFE -41.78
Consensus MFE -28.69
Energy contribution -29.40
Covariance contribution 0.71
Combinations/Pair 1.15
Mean z-score -1.92
Structure conservation index 0.69
SVM decision value -0.01
SVM RNA-class probability 0.529155
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16894725 106 - 23771897
GUUGAGGGCUGUACCUAGAGACUCCGAUGACACCAUCACCAUUUCGGCCGCAAGCAUCUCGGCGGUAGCUGAUGCUAGUGGAGCUUCUAGCUCCAGCAGCUCGAUC
((((((.((((...(((((..((((((((....))))............((.((((((..(((....))))))))).))))))..)))))...))))..)))))). ( -40.70)
>DroSec_CAF1 6371 106 - 1
AUUACGCGCUGUGCCCAGGGACUCCGAUGACACCAUCACCAUUUCGGCGGCUAGCAUCUCGGCGGUAGCCGAUGCUAGUGGAGCUUCUAGCUCCAGCAGCUCGAUC
....((.((((((((..((....))((((....))))........))).(((((((..(((((....))))))))))))(((((.....))))).))))).))... ( -46.20)
>DroSim_CAF1 6088 106 - 1
AUUACGCGCUGUGCCCAGGGACUCCGAUGACACCAUCACCAUUUCGGCGGCUAGCAUCUCGGCAGUAGCCGAUGCUAGUGGAGCUUCUAGCUCCAGCAGCUCGAUC
....((.((((((((..((....))((((....))))........))).(((((((..(((((....))))))))))))(((((.....))))).))))).))... ( -45.50)
>DroEre_CAF1 6644 106 - 1
GGUGAGGGCUGUGCCCAGGGACUCCGAUGACACUGUCACUGUUUCGGCAGCCAGCAUCUCGGCGGUAGCUGAUGGUAGUGGAGCCUCCAGCUCCAGCAGCUCGAUC
.....((((((((((..((....))((((...(((((........)))))....))))..)))((.(((((..(((......)))..))))))).))))))).... ( -41.00)
>DroYak_CAF1 6990 106 - 1
GGUGAGGGCUGUGCCCAGGGACUCCGAUGACACUGUCACUAUUACGGCGGCCAGCAUCUCGGCGGUGGCCGAUGGUAGUGGAGCCUCUAGCUCCAGCAGCUCGAUC
.....(((((((((..((((.(((((((......)))(((((((((((.(((.((......))))).)))).))))))))))).)))).))....))))))).... ( -45.00)
>DroAna_CAF1 6762 97 - 1
AGUCAGGGCAGUGCCCAGGGACUCCGAUGAUACCAUCACCAUUUCGGCUGCCAGCAUCUCAGCCAUUGCUGAUGGCUCCGGAG---------CCAGCAACUCCAUC
.....((((...))))..((.((((((((....))))........((..((((.....(((((....))))))))).))))))---------))............ ( -32.30)
>consensus
AGUGAGGGCUGUGCCCAGGGACUCCGAUGACACCAUCACCAUUUCGGCGGCCAGCAUCUCGGCGGUAGCCGAUGCUAGUGGAGCUUCUAGCUCCAGCAGCUCGAUC
.....((((((((((..((....))((((....))))........)))..........(((((....)))))......((((((.....))))))))))))).... (-28.69 = -29.40 +   0.71)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:40 2006