Locus 6321

Sequence ID 3L_DroMel_CAF1
Location 16,893,406 – 16,893,502
Length 96
Max. P 0.868735
window10139

overview

Window 9

Location 16,893,406 – 16,893,502
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 74.95
Mean single sequence MFE -19.61
Consensus MFE -2.25
Energy contribution -5.21
Covariance contribution 2.96
Combinations/Pair 1.13
Mean z-score -1.77
Structure conservation index 0.11
SVM decision value 0.86
SVM RNA-class probability 0.868735
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16893406 96 + 23771897
UCCAGUUCUUUGGCCCGCAAGUCGGUUGUAAUUACGUUCCUUUUUAAAGACCGAACAAUUAUUGCAUCUCAACGAUCGCUUGCAAGCCAUUUUUGU
..........((((..(((((.(((((((......(((((((....)))...))))......((.....))))))))))))))..))))....... ( -21.30)
>DroSec_CAF1 5040 95 + 1
UCCAGUUCCUUGGCUCGCAAGUCGGUUGUAAUUACGUUCCUC-UUAAAGACCGAACAAUUAUGCGAACUUUACGAUCCCUUGCAUGCCAUUUUUUU
..........((((..(((((..((((((((....(((((..-...................).)))).)))))))).)))))..))))....... ( -21.30)
>DroSim_CAF1 4757 95 + 1
UCCAGUUCCUUGGCUCGCAAGUCGGUUGUAAUUACGUUCCUC-UUAAAGACCGAACAAUUAUGCGAACUUUACGAUCCCUUGCAAGCCAUUUUUUU
..........(((((.(((((..((((((((....(((((..-...................).)))).)))))))).))))).)))))....... ( -23.10)
>DroEre_CAF1 5265 76 + 1
UCCAGCU-------------------UGUAAUUAAGUUCCUC-UUAAGGUCCCAACGAUUAUGGGAACUUAACGAUCCCUUGCAAGCCAUUUUCGU
....(((-------------------(((((((((((((((.-.(((.((....))..))).)))))))))).......))))))))......... ( -19.01)
>DroYak_CAF1 5558 84 + 1
UCCAGUUUCUUUGGCCCCAAGUCGGUUGCAAUUACAUUCCUC-UUAAGGACCGAACCA-----------UAACGACCCUUUGCAAGCCAUAUUCGU
...........((((..((((..(((((.........((((.-...))))........-----------...))))).))))...))))....... ( -13.35)
>consensus
UCCAGUUCCUUGGCCCGCAAGUCGGUUGUAAUUACGUUCCUC_UUAAAGACCGAACAAUUAUGCGAACUUAACGAUCCCUUGCAAGCCAUUUUUGU
..........((((..(((((..((((((..........................................)))))).)))))..))))....... ( -2.25 =  -5.21 +   2.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:37 2006