| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,886,672 – 16,886,769 |
| Length | 97 |
| Max. P | 0.604125 |
| Location | 16,886,672 – 16,886,769 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 83.45 |
| Mean single sequence MFE | -29.22 |
| Consensus MFE | -24.80 |
| Energy contribution | -24.47 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604125 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16886672 97 + 23771897 CUGA--AAACCAAUCUCUAUA---UCAGGCAUUGGCGGCACACGCUUCAUAUCGUUUGAGGAUCGCCACUGGCAUCACGACUGCUUUGUGUGUGCCAGCUGC ....--...(((((.(((...---..))).))))).(((.....(((((.......)))))...))).((((((((((((.....))))).))))))).... ( -28.40) >DroSec_CAF1 75798 97 + 1 CUCA--AAACCCUUUUCCUUA---UCAGGCAUUGGCGGCACACGUUUCAUCUCGUUUGAGGAUCGCCACUGGCAUCACGACUGCUUCGUGUGCGCCAGCUGC ....--...............---....(((((((((.((((((...((..((((.....(((.(((...)))))))))).))...)))))))))))).))) ( -28.20) >DroEre_CAF1 76562 97 + 1 UUGA--AACCCCUUUUUCCCA---UCAGGCAUUGGCGGCACACGCUUCAUCUCGUUUGAGGAUCGCCACUGGCACCACGACUGCUUCGUGUGCGCCAGCUGC ....--............((.---((((((...((((.....)))).......))))))))...((..(((((.((((((.....))))).).)))))..)) ( -28.30) >DroWil_CAF1 93029 102 + 1 UUAAUUAAUCUAUUUUGGUUAUCUGCAGGAAUUGGCGGCACACGUUUCAUAUCCUUUGAGGAUCGUCACUGGCAUCACGAUUGCUUCGUUUGUGCCAGUUGC ................((((.((...((((...((((.....)))).....))))..)).))))((.((((((((.((((.....))))..)))))))).)) ( -26.80) >DroYak_CAF1 76550 97 + 1 UUGA--AAACUCUCCUUCUUA---UUAGGCAUUGGCGGCACACGCUUCAUCUCGUUUGAGGAUCGCCACUGGCACCACGACUGCUUCGUGUGUGCCAGCUGC ....--...............---...(((...((((.....))))...((((....))))...))).((((((((((((.....))))).))))))).... ( -31.90) >DroAna_CAF1 73462 93 + 1 U--A--AAAAUGUAUUCCU-----UUAGGAAUUGGCGGCACACGAUUCAUCUCGUUCGAGGAUCGCCAUUGGCAUCACGACUGCUUCGUGUGUGCCAGCUGC .--.--.......(((((.-----...)))))..(((((...((((((.((......))))))))....(((((((((((.....))))).))))))))))) ( -31.70) >consensus UUGA__AAACCCUUUUCCUUA___UCAGGCAUUGGCGGCACACGCUUCAUCUCGUUUGAGGAUCGCCACUGGCAUCACGACUGCUUCGUGUGUGCCAGCUGC .........................(((....((((((......(((((.......))))).))))))((((((((((((.....))))).)))))))))). (-24.80 = -24.47 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:36 2006