Locus 632

Sequence ID 3L_DroMel_CAF1
Location 1,871,627 – 1,871,730
Length 103
Max. P 0.516124
window970

overview

Window 0

Location 1,871,627 – 1,871,730
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 80.98
Mean single sequence MFE -24.12
Consensus MFE -12.85
Energy contribution -13.77
Covariance contribution 0.92
Combinations/Pair 1.10
Mean z-score -1.91
Structure conservation index 0.53
SVM decision value -0.03
SVM RNA-class probability 0.516124
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1871627 103 + 23771897
UUUUCAGCUUGUUUUCGAGUAUUUAUUGCAGUGCACAGGAAACUAAAGUGCAAUGUGAUACAGGUCUUGUUUCUUUACUGACAAGCAGAUUUUUAAAGCAGCU
.....((((.(((((.(((....(((..((.(((((((....))...))))).))..)))...(.((((((........)))))))....))).))))))))) ( -26.50)
>DroSec_CAF1 11555 91 + 1
-------CUUGUUUUCGAGUAUUUAUUGCAGUGCACAGGAAACGAAAC-----UGUGAUACGGGUCUUGUUUCUUUACUGGCAAGCAGAAUUUCAAAGCAGCU
-------.(((((((.(((.((((.((((((((...(((((((((..(-----((.....)))...))))))))))))).))))...)))))))))))))).. ( -22.30)
>DroSim_CAF1 11741 91 + 1
-------CUUGUUUUCGAGUAUUUAUUGCAGUGCACAGGAAACUAAAC-----UGUGAUACGGGUCUUGUUUCUUUACUGACAAGCAGAUUUUCAAAGCAGCU
-------.(((((((.(((.((((.((((((((...(((((((....(-----((.....))).....)))))))))))).)))..)))).)))))))))).. ( -21.80)
>DroEre_CAF1 11375 86 + 1
CUU---GCUUGUUUUUGAGUAUUUAUUGCAGUGCACAGGAAACUAAACU--------------AUCUUGUAUCUCUACUGACGAGCAGAUAUUCAAAUCAGCU
...---(((.(..(((((((((((.((((((((.((((((.........--------------.)))))).....))))).)))..))))))))))).)))). ( -21.00)
>DroYak_CAF1 11716 103 + 1
UUUUCAGCUUGUUUUCGAGUACUUAUUGCAGUGCACAGGAAACUAAACUGUGCUGUGAAACAGAUCUUGUUUCAUUGCUGCCAAGCAGAUUUUCAAAUCAGCU
......(((((....))))).......(((((((((((.........)))))).(((((((((...))))))))).)))))..(((.((((....)))).))) ( -29.00)
>consensus
_UU___GCUUGUUUUCGAGUAUUUAUUGCAGUGCACAGGAAACUAAACU____UGUGAUACAGGUCUUGUUUCUUUACUGACAAGCAGAUUUUCAAAGCAGCU
........(((((((.(((.((((.((((((((...(((((((.........................)))))))))))).)))..)))).)))))))))).. (-12.85 = -13.77 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:13 2006