Locus 6319

Sequence ID 3L_DroMel_CAF1
Location 16,886,421 – 16,886,523
Length 102
Max. P 0.658660
window10137

overview

Window 7

Location 16,886,421 – 16,886,523
Length 102
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 79.22
Mean single sequence MFE -34.88
Consensus MFE -25.64
Energy contribution -26.37
Covariance contribution 0.73
Combinations/Pair 1.14
Mean z-score -1.18
Structure conservation index 0.74
SVM decision value 0.26
SVM RNA-class probability 0.658660
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16886421 102 - 23771897
CUAGCGUGAUGUUGCAGUGGGUGCAGGUGAAGCACUCGCGAUGCCACGGCUCGUUCUUGUAGGUAACACCUCCCGAGGUGAUGACCUAAAG-----CAACAGAAAGG--------
....(....((((((.((((((((.......))))))))((.((....)))).......(((((..(((((....)))))...)))))..)-----)))))....).-------- ( -37.20)
>DroWil_CAF1 92776 107 - 1
CCAGCGUGGUGUUGCAAUUGGUGCAAGUGAAGCACUCACGAUGCCACGGCUCGUUCUUAUAGGUAACACCACCCGAGGUGAUGACCUGC--------AAUGGAAGAAACCUGCAU
...((((((((((((....(((((.......))))).((((.((....))))))........))))))))))...((((.....((...--------...)).....)))))).. ( -36.20)
>DroYak_CAF1 76318 97 - 1
CUAGCGUGAUGUUGCAGUGGGUGCAGGUGAAGCACUCGCGAUGCCACGGCUCGUUCUUGUAGGUAACACCUCCCGAGGUGAUGACCUGA--------AAGU--GAAA--------
..((((.(.(((.(((((((((((.......))))))))..))).))).).))))(((.(((((..(((((....)))))...))))).--------))).--....-------- ( -34.00)
>DroMoj_CAF1 86095 105 - 1
CCAACGUGAUGUUGCAGUGGGUGCAAGUGAAGCACUCGCGAUGCCACGGCUCAUUCUUAUAGGUCACGCCACCCGAAGUGAUGACCUGU--CAAGCCAAUGAGAAGC--------
....((((..(((((...((((((.......)))))))))))..)))).((((((((((((((((((((........))).))))))))--.)))..))))))....-------- ( -38.70)
>DroAna_CAF1 73219 99 - 1
CUAGCGUGAUGUUGCAGUGGGUGCAGGUGAAGCACUCGCGAUGCCACGGCUCGUUCUUGUAGGUUACACCACCCGAGGUGAUGACCUAAAA-----UAU--ACAAA---------
....((((..(((((...((((((.......)))))))))))..))))....((.....(((((((((((......)))).)))))))...-----...--))...--------- ( -33.90)
>DroPer_CAF1 78288 103 - 1
CCAGCGUGAUGUUGCAAUGGGUGCACGUGAAGCACUCCCGAUGCCAGGGCUCGUUCUUGUAGGUAACCCCGCCAGAGGUGAUCACCUAAG------CGUUGAGAGAGCG------
...(((((((.(......).)).)))))...((.(((.(((((((((((.....)))))(((((.(((.(....).)))....))))).)------))))).))).)).------ ( -29.30)
>consensus
CCAGCGUGAUGUUGCAGUGGGUGCAGGUGAAGCACUCGCGAUGCCACGGCUCGUUCUUGUAGGUAACACCACCCGAGGUGAUGACCUAA_______CAAUGAAAAAA________
..((((.(.(((.(((((((((((.......))))))))..))).))).).))))....(((((..((((......))))...)))))........................... (-25.64 = -26.37 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:35 2006