Locus 6317

Sequence ID 3L_DroMel_CAF1
Location 16,874,435 – 16,874,527
Length 92
Max. P 0.922158
window10132

overview

Window 2

Location 16,874,435 – 16,874,527
Length 92
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 74.72
Mean single sequence MFE -18.94
Consensus MFE -14.32
Energy contribution -14.96
Covariance contribution 0.64
Combinations/Pair 1.05
Mean z-score -1.45
Structure conservation index 0.76
SVM decision value 1.15
SVM RNA-class probability 0.922158
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16874435 92 - 23771897
-----------------CAACUUCUUCGUGCGAAUUAAGUUUCGCUGGCCAUGCUCCUUCUAUCUAUCAUAUACAGUAUGAUAUAUGUUCGUGCUUGGCUAUAUGCACA
-----------------..........(((((((......)))..((((((.((.(....(((.((((((((...)))))))).)))...).)).))))))...)))). ( -24.00)
>DroSec_CAF1 63861 92 - 1
-----------------GAACUUCUUCGUGCGAAUUAAGUUUCGCUGGCCAUGCUCCUUCUAUCUAUCAUAUACAGUAUGAUAUAUGUUCGUGCUUGACUAUAUGCACA
-----------------((((....(((.(((((......))))))))................((((((((...))))))))...))))((((..........)))). ( -19.90)
>DroSim_CAF1 67509 109 - 1
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGUUUCGCUGGCCAUGCUCCUUCUAUCUAUCAUAUACAGUAUGAUAUAUGUUCGUGCUUGGCUAUAUGCACA
...........................................((((((((.((.(....(((.((((((((...)))))))).)))...).)).))))))...))... ( -17.70)
>DroEre_CAF1 64602 83 - 1
-----------------AUAAUA------ACGCUUCAAAAUUCGCUGGCCAUGCUCC---UAUCUAUCAUAUGCAGUUUGAUAUAUGUUCGUGUUUGGCUAUAUGCACA
-----------------......------..............((((((((.((.(.---(((.(((((.........))))).)))...).)).))))))...))... ( -13.30)
>DroYak_CAF1 64136 89 - 1
-----------------CGACUUCUUUGUCCGAAUCAAGUUUCGCUGGCCAUGCUCC---UAUCUAUCACAUACAGUAUGAUAUAUGUUCGUGCUGGGCUAUAUGCACA
-----------------.(((......))).(((......)))((((((((((....---.........))).((((((((.......)))))))))))))...))... ( -19.82)
>consensus
_________________CAACUUCUU_GUGCGAAUCAAGUUUCGCUGGCCAUGCUCCUUCUAUCUAUCAUAUACAGUAUGAUAUAUGUUCGUGCUUGGCUAUAUGCACA
...........................................((((((((.((.(....(((.((((((((...)))))))).)))...).)).))))))...))... (-14.32 = -14.96 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:29 2006