| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,872,525 – 16,872,617 |
| Length | 92 |
| Max. P | 0.603588 |
| Location | 16,872,525 – 16,872,617 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 87.78 |
| Mean single sequence MFE | -33.25 |
| Consensus MFE | -25.08 |
| Energy contribution | -26.58 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603588 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16872525 92 - 23771897 UGUGGGGGAAGAUUUAUGAAGCCUCUUCAUCUGCGGUUGCACUUGGUGGCCCAUUGAUGGGUGACACCGCUGCC-------GCGGCAUGAAUGAUCUCA .....((((..((((((((((...))))..(((((((.((....(((((((((....)))))..)))))).)))-------)))).))))))..)))). ( -32.80) >DroSec_CAF1 61983 92 - 1 UGUGGGGGAAGAUUUAUGAACCCUCUUCUUCUGCUGUUGCACUUGGUGGCCCAUUGAUGGGUGACAUCGCUGCC-------GCGGCAUGAAUGAUCUCA ...(((((............))))).(((((((((((.((((...((.(((((....))))).))...).))).-------)))))).))).))..... ( -30.30) >DroSim_CAF1 65666 92 - 1 UGUGGGAGAAGAUUUAUGAACCCUCUUCUUCUGCGGUUGCACUUGGUGGCCCAUUGAUGGGUGACACCGCUGCC-------GCGGCAUGAAUGAUCUCA .....((((..(((((((............(((((((.((....(((((((((....)))))..)))))).)))-------)))))))))))..)))). ( -32.90) >DroYak_CAF1 62259 97 - 1 UGUGG--GAAGAUUUAUGAACGAUCCUCUGAGGCACUUGCACUUGGUGGCCCAUUGAUGGGUGACACCGCUGCCUCGAGCCUCGGCGUGAAUGAUCUCA ..(((--((..(((((((..(((..(((.((((((...((....(((((((((....)))))..)))))))))))))))..))).)))))))..))))) ( -37.00) >consensus UGUGGGGGAAGAUUUAUGAACCCUCUUCUUCUGCGGUUGCACUUGGUGGCCCAUUGAUGGGUGACACCGCUGCC_______GCGGCAUGAAUGAUCUCA .(((((((((((...........)))))))))))..........(((((((((....)))))..))))(((((........)))))............. (-25.08 = -26.58 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:28 2006