Locus 6314

Sequence ID 3L_DroMel_CAF1
Location 16,869,496 – 16,869,603
Length 107
Max. P 0.632495
window10128

overview

Window 8

Location 16,869,496 – 16,869,603
Length 107
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 76.01
Mean single sequence MFE -40.72
Consensus MFE -22.83
Energy contribution -23.15
Covariance contribution 0.32
Combinations/Pair 1.60
Mean z-score -1.60
Structure conservation index 0.56
SVM decision value 0.20
SVM RNA-class probability 0.632495
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16869496 107 - 23771897
AGAGAGUCUAGAAUGGCUGUUUGCAGCUCCCUUUGAGCUGCAGCCUGCUCUCUAGCGUAAUCCAUGCUCGAUCCUGGAGAUGGGCUUCGGGAUCUCUGAAAUUGAGC
(((((((.......((((....(((((((.....))))))))))).)))))))(((((.....))))).((((((((((.....))))))))))............. ( -41.50)
>DroGri_CAF1 59415 107 - 1
AGCGAAUUCAAAAUAGCUGCCUGCAUUUCACGCUGCGCCGCUGCCUGCUCCCGGGCCACACUCAAGUCUAGGGAGGGCGAUGGACUAUGCGAGCGUCGAAACUGAGC
......((((.....((.....)).(((((((((((((((.((((..(((((((((.........)))).))))))))).)))....))).))))).)))).)))). ( -32.50)
>DroSim_CAF1 62654 107 - 1
AGAGAGUCUAGAAUGGCUGCUUGGAGCUCCCUUUGAGCUGCAGCCUGUUCUCGAGCGUAGUCCAUGCUCGAUCCUGGAGAUGGGCUCCGGGAUCUCUGAAAUUGGGC
(((((.....((((((((((....(((((.....))))))))))).))))((((((((.....))))))))((((((((.....))))))))))))).......... ( -47.40)
>DroEre_CAF1 59890 107 - 1
AGAGAGCCUAGAAUGGCAGCUUGGAGCUCCCUUUGAGUUGCUGCCUGCUCUCGGGCGUAAUCCAUGCUCAUUCCUGGAGACGGGCUUCGGGAUCUCUGAAACUGGGC
.....((((((...(((((((..(((....)))..)))))))(((((((((.((((((.....)))).....)).)))).)))))(((((.....))))).)))))) ( -42.80)
>DroYak_CAF1 59245 107 - 1
AGAGAGUCUAGGAUGGCUGCUUGGAGCUCCCUUUGAGCUGCAGCCUGUUCUCGAGCGUAAUCCAUGCUCAUUCCGGGAGAUGGGCUUCGGGAUCUCUGAAAUUGGGC
(((((....(((((((((((....(((((.....))))))))))).))))).((((((.....))))))..(((.((((.....)))).)))))))).......... ( -39.30)
>DroAna_CAF1 56924 107 - 1
AGGGAGUCCAGGAUGGCGGCUUGCAGCUCCCUUUGGACCGCUGCCUGUUCCCGGGCCUCUUCAAAGCUUAGUCCUGGCGAGGGACUCCUCGAUCUCUCAAAUUCAGC
.(((((.(((((((((..((..((((((((....)))..)))))..))..))((((.........)))).)))))))(((((....)))))..)))))......... ( -40.80)
>consensus
AGAGAGUCUAGAAUGGCUGCUUGCAGCUCCCUUUGAGCUGCAGCCUGCUCUCGAGCGUAAUCCAUGCUCAAUCCUGGAGAUGGGCUUCGGGAUCUCUGAAAUUGAGC
.((((((.......((((((....(((((.....))))))))))).)))))).............(((((((...((((((..........))))))...))))))) (-22.83 = -23.15 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:25 2006