Locus 6313

Sequence ID 3L_DroMel_CAF1
Location 16,868,177 – 16,868,289
Length 112
Max. P 0.756175
window10127

overview

Window 7

Location 16,868,177 – 16,868,289
Length 112
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 78.59
Mean single sequence MFE -35.07
Consensus MFE -18.68
Energy contribution -21.00
Covariance contribution 2.33
Combinations/Pair 1.22
Mean z-score -2.04
Structure conservation index 0.53
SVM decision value 0.49
SVM RNA-class probability 0.756175
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16868177 112 + 23771897
CACUUGGUGCUGUUUUGGAAGAAA---GGGGACGGGAGCCUUCUGUCGGAAGGAUUCAAUCCAGAUCCCGCUCCCGCUCCCGUUCACCACUUCCCACCUCAGAGAACCUAGAAAA
..((.(((.(((....(((((...---((((((((((((.....((.(((.((((...))))...))).))....)))))))))).)).))))).....)))...))).)).... ( -41.70)
>DroSec_CAF1 57681 106 + 1
CACUUGGCGCUGUUUUGGAAGAAA---GGGGACGGGAGCCUUCUGUCGGAAGGAUUCAAUCUAGAUCCCGC------UCCCGGUCACCACUUCCCACCUCAGAGAACCUAGAAAA
..((.((..(((....(((((...---(((..(((((.(((((.....)))))..((......))))))).------.)))((...)).))))).....)))....)).)).... ( -33.70)
>DroSim_CAF1 61335 106 + 1
CACUUGGUGCUGUUUUGGAAGAAA---GGGGACGGGAGCCUUCUGUCGGAAGGAUUCAAUCCAGAUCCCGC------UCCCGUUCACCACUUCCCACCUCAGAGAACCUAGAAAA
..((.(((.(((....(((((...---((((((((((((.(((.....)))(((((.......))))).))------)))))))).)).))))).....)))...))).)).... ( -39.40)
>DroEre_CAF1 58580 106 + 1
CACGUGGUUCUGCCUUGGAAGAAA---GGGGACGGGAGUCUUCUGUCGGAAGGAUCCAAUCCAGAUCUCGC------UCCCGUUCACCACUUUCCAGCUCAGAGAACCUAGAUAG
.....(((((((..(((((((...---((((((((((((((((.....))))((((.......))))..))------)))))))).))..)))))))..))))..)))....... ( -39.10)
>DroWil_CAF1 68796 92 + 1
-----GGAUCUGAGGUCGAACAAAACAGUGCAAAAGAUUCUUCCGCC------------UCGCGAUCACGU------UCUCGAUCACCUCUUCCUACCUCUGAAAACUUGGAGAG
-----(((...(((((...........(((.....((....))....------------.)))((((....------....))))))))).)))...(((..(....)..))).. ( -19.50)
>DroYak_CAF1 57938 106 + 1
CACUUGGUACUGUACUGGAAGAAA---GGGGACGGGAGUCUUCUGUCGGAAGGAUCCAAUCCAGAUCCCGC------UCCCGUUCACCACUUCCCACCUCAGAGAACCUAGAUAA
..((.(((.(((....(((((...---((((((((((((.(((.....)))(((((.......))))).))------)))))))).)).))))).....)))...))).)).... ( -37.00)
>consensus
CACUUGGUGCUGUUUUGGAAGAAA___GGGGACGGGAGCCUUCUGUCGGAAGGAUUCAAUCCAGAUCCCGC______UCCCGUUCACCACUUCCCACCUCAGAGAACCUAGAAAA
..((.(((.(((....(((((......((((((((((.......((.(((.((((...))))...))).))......)))))))).)).))))).....)))...))).)).... (-18.68 = -21.00 +   2.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:24 2006