Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,863,006 – 16,863,097 |
Length | 91 |
Max. P | 0.639717 |
Location | 16,863,006 – 16,863,097 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 93.02 |
Mean single sequence MFE | -31.75 |
Consensus MFE | -29.59 |
Energy contribution | -29.82 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.07 |
Mean z-score | -1.02 |
Structure conservation index | 0.93 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.639717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16863006 91 + 23771897 -----UCCGUGUGAGUGAGUGCUCGCUGUCACGGGCUCUGGUUUUUAUCGCCCGCCGCACGCAGUUCACGUUUAUUGCAUAGGUGCGGCAAUCGCC -----.(((((..(((((....)))))..)))))((...(((.......))).((((((((((((........)))))....)))))))....)). ( -33.70) >DroSec_CAF1 52516 91 + 1 -----UCCGUGUGAGUGAAUGCUCGCUGUCACGGGCUCUGGUUUUUAUCGCCCGCCGCACGCAGUUCACGUUUAUUGCAAAGGUGCGACUAUCGCC -----.((((((((((((....)))))....(((((...(((....)))))))).)))))(((((........)))))...)).(((.....))). ( -28.20) >DroSim_CAF1 56201 91 + 1 -----UCCGUGUGAGUGAGUGCUCGCUGUCACGGGCUCUGGUUUUUAUCGCCCGCCGCACGCAGUUCACGUUUAUUGCAUAGGUGCGGCUAUCGCC -----.(((((..(((((....)))))..)))))((...(((.......))).((((((((((((........)))))....)))))))....)). ( -33.20) >DroEre_CAF1 53475 90 + 1 -----UCCGUGUGAGUGAGUGCUCGCUGUCACGGGCUCUGGUUUUUAUCGCCCGCCGCACGCAGUUCAG-UUUAUUGCAUAGGUGCGGCUAUCGCC -----.(((((..(((((....)))))..)))))((...(((.......))).((((((((((((....-...)))))....)))))))....)). ( -32.90) >DroYak_CAF1 52780 91 + 1 -----UCCGUGUGAGUGAGUGCUCGCUGUCACGGGCUCUGGUUUUUAUCGCCCGCCGCACGCAGUUCCCUUUUAUUGCAUAGGUGCGGCUAUCGCC -----.(((((..(((((....)))))..)))))((...(((.......))).((((((((((((........)))))....)))))))....)). ( -33.20) >DroAna_CAF1 50411 96 + 1 GUGGAUGGAUGUGAGUGAGUGCUCACUGUCACGGGCUCUGGUUUUUAUCGUCCGCCACACGCAGUUCACAUUUAUUGCAUAGGUGCGGCUAUCGCC ((((.((((((.(((..((.((((........)))).))..)))....))))))))))..(((((........)))))........(((....))) ( -29.30) >consensus _____UCCGUGUGAGUGAGUGCUCGCUGUCACGGGCUCUGGUUUUUAUCGCCCGCCGCACGCAGUUCACGUUUAUUGCAUAGGUGCGGCUAUCGCC ........(((..(((((....)))))..)))((((...(((....)))))))((((((((((((........)))))....)))))))....... (-29.59 = -29.82 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:23 2006