Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,848,345 – 16,848,447 |
Length | 102 |
Max. P | 0.855440 |
Location | 16,848,345 – 16,848,447 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 82.53 |
Mean single sequence MFE | -21.40 |
Consensus MFE | -12.19 |
Energy contribution | -13.04 |
Covariance contribution | 0.85 |
Combinations/Pair | 1.00 |
Mean z-score | -2.08 |
Structure conservation index | 0.57 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16848345 102 + 23771897 AUCCACGCCGGCAACUGCAACAUCAACAUCCGAUUCGCGGCAGCAACUGCAACUGCAACUGAA------GCUGCCACUGCCACAAACAUAUGCAUACCCCCCGUCCCC .........((((...((...(((.......)))..))((((((..((((....)))...)..------))))))..))))........................... ( -21.60) >DroSec_CAF1 37892 98 + 1 AUCUAAGCCGACAACUGCAACAUCAACAUCCGAUUCGCAGCAGCAACUGCAACUGCAACUGAA------GCUGCCACUGCCACAAACAUAUGCAUGCAUCCCCU---- ...............((((.................(((((..((..(((....)))..))..------)))))...(((...........)))))))......---- ( -16.70) >DroSim_CAF1 40630 98 + 1 AUCCAAGCCGGCAACUGCAACAUCAACAUCCGAUUCGCGGCAGCAACUGCAACUGCAACUGAA------GCUGCCACUGCCACAAACAUAUGCAUGCAUCUCCC---- .........((((...((...(((.......)))..))((((((..((((....)))...)..------))))))..)))).......................---- ( -21.60) >DroEre_CAF1 38603 96 + 1 AUCCACGGCGGCUACUGCAACAUCAACAUCCGAUCCGCGGCAGCAACUG------CAACUGAAGCUGCCACUGCCACUGCCACAAACAUAUUCAUUCGACCC------ ......((((((....((...(((.......)))..))((((((..(..------.....)..))))))...)))...))).....................------ ( -21.90) >DroYak_CAF1 38045 102 + 1 AUCCACAGCGGCCACUGCAACAUCAACAUCCGAUCCGCGGCAGCAACUGCAGCUGCAACUGAAGCUGCUACUGCCACUGCCACAAACAUAUUCAAUCCCCCC------ .......(.(((....((...(((.......)))..))(((((.....((((((........))))))..)))))...))).)...................------ ( -25.20) >consensus AUCCACGCCGGCAACUGCAACAUCAACAUCCGAUUCGCGGCAGCAACUGCAACUGCAACUGAA______GCUGCCACUGCCACAAACAUAUGCAUGCACCCC______ .........(((....((...(((.......)))..))((((((...(((....)))............))))))...)))........................... (-12.19 = -13.04 + 0.85)
Location | 16,848,345 – 16,848,447 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.53 |
Mean single sequence MFE | -35.98 |
Consensus MFE | -24.57 |
Energy contribution | -24.06 |
Covariance contribution | -0.51 |
Combinations/Pair | 1.13 |
Mean z-score | -2.10 |
Structure conservation index | 0.68 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.855440 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16848345 102 - 23771897 GGGGACGGGGGGUAUGCAUAUGUUUGUGGCAGUGGCAGC------UUCAGUUGCAGUUGCAGUUGCUGCCGCGAAUCGGAUGUUGAUGUUGCAGUUGCCGGCGUGGAU ((.((((.((.((..((((..((((((((((((.(((((------(.(....).))))))....))))))))))))...))))..)).)).).))).))......... ( -37.00) >DroSec_CAF1 37892 98 - 1 ----AGGGGAUGCAUGCAUAUGUUUGUGGCAGUGGCAGC------UUCAGUUGCAGUUGCAGUUGCUGCUGCGAAUCGGAUGUUGAUGUUGCAGUUGUCGGCUUAGAU ----.((.((((((.((((((((((((.((((..(((((------(.(((......))).))))))..)))).)..)))))))..)))))))).)).))......... ( -31.40) >DroSim_CAF1 40630 98 - 1 ----GGGAGAUGCAUGCAUAUGUUUGUGGCAGUGGCAGC------UUCAGUUGCAGUUGCAGUUGCUGCCGCGAAUCGGAUGUUGAUGUUGCAGUUGCCGGCUUGGAU ----((.((.((((.((((..((((((((((((.(((((------(.(....).))))))....))))))))))))...))))......)))).)).))......... ( -36.10) >DroEre_CAF1 38603 96 - 1 ------GGGUCGAAUGAAUAUGUUUGUGGCAGUGGCAGUGGCAGCUUCAGUUG------CAGUUGCUGCCGCGGAUCGGAUGUUGAUGUUGCAGUAGCCGCCGUGGAU ------...............(((..((((.(((((((..((.((.......)------).))..))))))).....((.(((.......)))....))))))..))) ( -34.90) >DroYak_CAF1 38045 102 - 1 ------GGGGGGAUUGAAUAUGUUUGUGGCAGUGGCAGUAGCAGCUUCAGUUGCAGCUGCAGUUGCUGCCGCGGAUCGGAUGUUGAUGUUGCAGUGGCCGCUGUGGAU ------......((..(...(((((((((((((.(((((.(((((....))))).)))))....))))))))))).))....)..)).(..((((....))))..).. ( -40.50) >consensus ______GGGAGGAAUGCAUAUGUUUGUGGCAGUGGCAGC______UUCAGUUGCAGUUGCAGUUGCUGCCGCGAAUCGGAUGUUGAUGUUGCAGUUGCCGGCGUGGAU .....................(((((((((((..((.(.........)...(((....)))))..)))))))))))(((.(((.......)))....)))........ (-24.57 = -24.06 + -0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:22 2006